Metallosphaera sedula DSM 5348: Msed_0210
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Entry
Msed_0210 CDS
T00509
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Msed_0210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mse03019
]
Msed_0210
03009 Ribosome biogenesis [BR:
mse03009
]
Msed_0210
04131 Membrane trafficking [BR:
mse04131
]
Msed_0210
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mse04147
]
Msed_0210
Messenger RNA biogenesis [BR:
mse03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Msed_0210
Ribosome biogenesis [BR:
mse03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Msed_0210
Membrane trafficking [BR:
mse04131
]
SNARE
SNARE associated proteins
Others
Msed_0210
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Msed_0210
Exosome [BR:
mse04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Msed_0210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_22
AAA_5
TIP49
AAA_14
AAA_33
IstB_IS21
AAA_28
RNA_helicase
Mg_chelatase
nSTAND3
ATPase_2
AAA_18
Vps4_C
AAA_lid_PRS2_C
AAA_24
NPHP3_N
ABC_tran
DUF815
AAA_17
AAA_3
Parvo_NS1
AAA_7
TsaE
NB-ARC
ATP-synt_ab
NACHT
Zeta_toxin
AAA_25
NTPase_1
PhoH
Bac_DnaA
UFD1_N2
SPT16
Motif
Other DBs
NCBI-ProteinID:
ABP94387
UniProt:
A4YD85
LinkDB
All DBs
Position
171221..173527
Genome browser
AA seq
768 aa
AA seq
DB search
MSAGSSPEQRSPRRELSLKVMEARQKDVGRGKVRIDVEMLAQIDVSPGDVVEIEGTRKTA
AIAWPLSPDDATSERDIIRMDGITRKNAGVSIGDKVIVRKASVKQAASIKLAPSNFSITV
DPGFVAYVKKKLKEFPLVEGDTVLIPVLGQAIPFTVIQVRPASIVMVVDETSISISDKPI
EQTRYPRVTYEDIGGMKNVIQKIRELVELPLRHPELFKRLGIEPPKGIMLYGPPGVGKTL
LAKAVANETESYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFIDEVDAIAPKR
DEVIGEVERRVVAQLLTLMDGLESRGNVIVIAATNRPNAVDPALRRPGRFDREIEIPLPD
KQGRLEILQIHTRNMPLSKDVELEKLADISHGYTGADLSALVREAAMNALRRYLPMIDIS
QDKIPPEILERMEVKMEDFMNAFKEIVPSGMREIYIEVPEVKWDDIGGLNEIKEELREVA
EYPLKFPDYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVG
ESERAIREIFRKARMYAPSVIFFDEIDAIAPMRGISSDSGVTERLVNQLLAEMDGIENLD
NVVIVAATNRPDILDPALLRPGRFEKLMYVPPPDKNARYDILKVHTKKVALSDEVNLEEL
AERTEGYTGADLAALVREAAMRAIREGMRECVNRVSAACPPNDKDCRDAKMRDCMKGATI
KVENRHFNEALTKVKPSLSQEMIQFYQTWIDKARQQLPRQTVKPSTFT
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgctggttctagcccagagcaaaggtcgccaagacgagagttgtctctgaaggtg
atggaagcaaggcaaaaggatgttggtagaggaaaggtaagaatagacgttgagatgctt
gcacaaatcgatgttagtccaggtgatgtagtggagattgagggtactagaaagacggca
gcaatagcgtggccactgtccccagatgacgccactagcgagagagatataatcagaatg
gatggcataactaggaagaacgcaggtgtctccattggagacaaggtgatagtaaggaag
gcctctgtgaagcaagctgcatccatcaaacttgccccttccaacttttcgattaccgta
gatccaggtttcgtggcatacgtcaagaagaagcttaaggagttcccactggttgaaggt
gacactgttcttatcccagtgctgggtcaggctattcccttcacggtaatacaggtcaga
ccggcgtcgattgtgatggttgtcgacgagaccagtatttccatctctgacaagcccata
gagcagaccaggtatcccagggtcacgtacgaggatataggaggaatgaaaaacgttata
cagaagatcagagaacttgtggagttaccgttgagacatccagaactcttcaagaggttg
ggaatcgagccaccaaaggggatcatgttatacggtcctccaggtgtgggtaagaccctg
ctggccaaggctgttgccaatgaaactgaatcctatttcacctcaataaacgggccagag
ataatgagcaagttctacggcgagagcgagcagaggctcagggagatcttcgaagatgct
aagaaacatgccccagccataatattcattgatgaagtagacgccatagctcccaagagg
gatgaggttataggagaggtagagagacgtgttgtcgcgcagttgctgacactcatggat
ggtctagagagtaggggaaatgtaatagtcattgcagctaccaacaggccaaatgcagta
gatcctgcactgagaaggcctgggagatttgaccgtgaaatagagatacccctaccagat
aagcagggcagactggaaatacttcagatccacactaggaacatgccactttcaaaggac
gtggaactggagaaattggctgatataagtcatggctatactggggccgacctttctgcc
ctagtcagggaggctgcaatgaacgccctgagaagatatttgcccatgatagatatcagt
caggacaagatcccgccagagatcctagagagaatggaagtcaagatggaggacttcatg
aatgcattcaaggaaattgtgcccagcggcatgagagagatctacattgaggttccagag
gtaaagtgggatgacataggcggtctcaacgagattaaggaagagcttagagaggtagca
gagtatccgctgaagttcccagactactatgaaaccgcaggagtggaaccaccaaaggga
atactcctgtttggacctccaggcacaggtaagaccatgctggcaaaggctgtagcaacc
gagagcggagcgaactttattgctgtgagaggtcctgaagttctctctaagtgggtaggg
gagagtgagagggcaatcagggagatatttagaaaggcgagaatgtatgcaccatcggtg
atattcttcgacgaaatagatgccatagctcccatgaggggaatctcctctgactctggt
gtaactgagagactagttaaccaacttctagctgagatggatggcatagagaacctagac
aacgttgttattgtggcagctaccaataggccagatatactagatccagccctactgagg
cctggaaggttcgagaaacttatgtacgtacccccacctgacaagaacgctagatatgac
atactaaaggttcacaccaagaaggttgctctctcggacgaagttaacctagaggaacta
gctgagaggacagagggatatacaggcgccgatctggcagccttggttagggaggctgca
atgagggccatcagagaagggatgagggaatgcgtaaatagggtcagtgcagcttgtcca
cctaatgataaggattgtcgcgacgcgaaaatgagagattgcatgaagggcgcaacaatt
aaggtggagaacaggcatttcaacgaagccttaactaaggttaagccatcgctcagccag
gagatgatacaattctatcagacatggattgataaggcaagacagcaactaccaagacag
actgtgaagcccagtacgtttacgtga
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