Metallosphaera sedula DSM 5348: Msed_1863
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Entry
Msed_1863 CDS
T00509
Name
(GenBank) RNA binding S1 domain protein
KO
K07573
exosome complex component CSL4
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Msed_1863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mse03019
]
Msed_1863
Messenger RNA biogenesis [BR:
mse03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Msed_1863
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Msed_1863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_3
Zn_ribbon_NOB1
HVO_2753_ZBP
Zn_ribbon_8
FtrD-like
DUF3797
OB_RRP5_4th
Auto_anti-p27
Cas12f1-like_TNB
HypA
DUF5816
zf-C2HC5
Zn_ribbon_PaaD
A2L_zn_ribbon
DmmA-like_C
Motif
Other DBs
NCBI-ProteinID:
ABP96003
UniProt:
A4YHV1
LinkDB
All DBs
Position
complement(1808152..1808727)
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AA seq
191 aa
AA seq
DB search
MGKQGDLTLPGDVLSVIEEFTPGEGCYELQGQVRASIIGKVFYDMINRKSNVIPEKKTFV
YKLKKAKYMYGLVTSLKEDYAVVAVSSVEERFVSPSITGYLHISQVSHKHVKSLRDAVRP
SDVIKARPISYTYPLQLSLRGKDLGVIVASCSICGTVMLKMDEEHLKCPNCGNVETRRVG
PYSVKGNGNRS
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacagggcgatttaacgcttcctggggacgttctctccgtgatcgaggagttc
actccaggtgagggttgttacgaacttcagggtcaggtcagagcatcaatcattgggaaa
gtcttctacgacatgatcaacaggaaaagcaacgtgatccctgagaagaagacctttgta
tacaagctcaagaaggccaagtacatgtacggcctcgtcaccagcctgaaggaagattac
gcggttgtggcagtgagtagtgtagaggagaggttcgtgagcccgtcaataacgggttac
ctccacatctcgcaggtctcccacaaacacgttaagtccctacgagacgcagtgaggcca
tctgacgtgataaaggccaggccaatctcctacacctacccccttcagctctcgctcagg
ggaaaggacctcggagtgatagttgcgtcctgctccatttgcgggaccgtaatgctcaag
atggacgaagaacatttaaagtgcccgaactgtggtaacgttgagaccagaagagttgga
ccttactcggtgaagggaaatggaaatcgcagttga
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