Metallosphaera sedula DSM 5348: Msed_1867
Help
Entry
Msed_1867 CDS
T00509
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03022
Basal transcription factors
mse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Msed_1867
09124 Replication and repair
03420 Nucleotide excision repair
Msed_1867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mse03021
]
Msed_1867
03036 Chromosome and associated proteins [BR:
mse03036
]
Msed_1867
03400 DNA repair and recombination proteins [BR:
mse03400
]
Msed_1867
Enzymes [BR:
mse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Msed_1867
Transcription machinery [BR:
mse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Msed_1867
Chromosome and associated proteins [BR:
mse03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Msed_1867
DNA repair and recombination proteins [BR:
mse03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Msed_1867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
DUF3969
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABP96007
UniProt:
A4YHV5
LinkDB
All DBs
Position
complement(1811079..1812704)
Genome browser
AA seq
541 aa
AA seq
DB search
MELRDWQLALKDKVVKGLREGNLVALQSPTGSGKTLFSLVSAFEVRPRVLFTVRTHNEFY
PVYREVNRLGKRFSFVMGKGRACLYADEGADPEDIKCSLCDSYVAMFVDSTEPPFTLLKE
LKERGRREKFCPYFSLINSTSVADVIAVTYPYVFTPWMWEALGLELDDFVLVVDEAHNLD
NLNELAERKLSQQILDLALKEVKSKEAISILERIKRELGEVVLQEERYIKVEDYPKVDGH
ELKLLKEEYEDRRNEMIANRSIRKLHLGSVIKFYSSDEAPVFSYRGHLVMKPLLSSPFLS
ILNRDDLPVILMSGTMPPKEYLSKVLGIQRQILYLDVEKEVKAKVTGSFDCMLAIDVTSS
YSLRSQEMWKKYASYLLRIYHLAKANILAIFPSYSIMEKVMAHVKVDKYVEGSRTNLEEV
IGESGKRKLIIAGVARGKLSEGIELTRDGASVISDVVLCGIPYPSFDDYLKLRSEAIYKL
TGQPVREALMEIPALIAVKQAIGRAIRSRQDHATVWLLDRRFETSWWKLKINCFNPKKVK
L
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
gtggagctaagggactggcaattagcgctcaaggacaaggtagtgaaggggctaagggaa
ggcaatctagtagccctgcagtcccccactggaagtggaaagactcttttctctctcgtt
tccgcgtttgaagttaggcctagggttcttttcactgttagaacccacaacgagttctac
cctgtttacagggaagttaacaggctcgggaagaggttctccttcgtcatggggaaggga
agggcctgcctctacgccgatgaaggcgcagatcctgaggacataaagtgctccctgtgt
gactcctacgttgcgatgttcgtggattccacggagcctccctttacccttctcaaggaa
ctcaaggagagagggagaagggagaagttttgcccctatttctccctgattaactcaacc
agcgtcgccgacgtgattgccgtgacctatccctacgtgttcacgccttggatgtgggag
gcccttggtctggaactagacgacttcgtcctcgtggtggatgaggcccacaacctggat
aacttgaacgagctagcagagaggaagctcagccagcaaatcctcgacctcgccctcaag
gaggttaagagcaaggaggcaatctcgatccttgagagaatcaagagggaactaggtgag
gtggtcctccaagaggagagatacatcaaggtagaggattatcctaaggtggacggacac
gaactcaagctcctgaaggaggaatacgaggacagaaggaacgagatgattgccaacaga
tccataaggaaactccacttgggatcggtgatcaagttctacagctcagatgaggcccca
gtcttctcctaccgtggtcacctggtgatgaagcccctcctctcctcaccatttctgtcg
atcctaaatcgcgacgacctacccgtgatactaatgtcagggaccatgccaccaaaggag
tacctgagcaaggtcctgggaatacagaggcagattctttacctagacgtcgagaaggag
gtgaaggcgaaggtcacagggtcctttgattgtatgcttgcaattgacgtaacctcgtcc
tactccctgaggagccaggagatgtggaagaaatacgccagctacctcctcaggatatat
cacctggccaaggccaacatcctcgcgattttccccagttactccatcatggagaaggtc
atggcccacgtaaaggttgacaagtacgtcgaaggtagcaggacaaacctagaggaggtg
atcggtgagtccggaaagaggaagctcatcattgctggagttgcccggggtaagctctcc
gaggggattgagctaaccagggacggagccagcgtcataagcgacgtcgtcctctgcggt
ataccctatccctcctttgacgattacctgaaacttaggagcgaggccatatacaagtta
acgggacaacctgttagggaggctctcatggagataccggcactcatagcggtgaagcag
gcaatagggagggcaatcaggagcaggcaggaccatgctaccgtctggttactagatagg
aggtttgaaacctcgtggtggaaactaaagataaactgttttaatcccaagaaggtgaaa
ctctag
DBGET
integrated database retrieval system