KEGG   Metallosphaera sedula DSM 5348: Msed_1867
Entry
Msed_1867         CDS       T00509                                 
Name
(GenBank) DEAD_2 domain protein
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
mse  Metallosphaera sedula DSM 5348
Pathway
mse03022  Basal transcription factors
mse03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mse00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Msed_1867
  09124 Replication and repair
   03420 Nucleotide excision repair
    Msed_1867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mse03021]
    Msed_1867
   03036 Chromosome and associated proteins [BR:mse03036]
    Msed_1867
   03400 DNA repair and recombination proteins [BR:mse03400]
    Msed_1867
Enzymes [BR:mse01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     Msed_1867
Transcription machinery [BR:mse03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Msed_1867
Chromosome and associated proteins [BR:mse03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    Msed_1867
DNA repair and recombination proteins [BR:mse03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Msed_1867
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII DUF3969 PhoH
Other DBs
NCBI-ProteinID: ABP96007
UniProt: A4YHV5
LinkDB
Position
complement(1811079..1812704)
AA seq 541 aa
MELRDWQLALKDKVVKGLREGNLVALQSPTGSGKTLFSLVSAFEVRPRVLFTVRTHNEFY
PVYREVNRLGKRFSFVMGKGRACLYADEGADPEDIKCSLCDSYVAMFVDSTEPPFTLLKE
LKERGRREKFCPYFSLINSTSVADVIAVTYPYVFTPWMWEALGLELDDFVLVVDEAHNLD
NLNELAERKLSQQILDLALKEVKSKEAISILERIKRELGEVVLQEERYIKVEDYPKVDGH
ELKLLKEEYEDRRNEMIANRSIRKLHLGSVIKFYSSDEAPVFSYRGHLVMKPLLSSPFLS
ILNRDDLPVILMSGTMPPKEYLSKVLGIQRQILYLDVEKEVKAKVTGSFDCMLAIDVTSS
YSLRSQEMWKKYASYLLRIYHLAKANILAIFPSYSIMEKVMAHVKVDKYVEGSRTNLEEV
IGESGKRKLIIAGVARGKLSEGIELTRDGASVISDVVLCGIPYPSFDDYLKLRSEAIYKL
TGQPVREALMEIPALIAVKQAIGRAIRSRQDHATVWLLDRRFETSWWKLKINCFNPKKVK
L
NT seq 1626 nt   +upstreamnt  +downstreamnt
gtggagctaagggactggcaattagcgctcaaggacaaggtagtgaaggggctaagggaa
ggcaatctagtagccctgcagtcccccactggaagtggaaagactcttttctctctcgtt
tccgcgtttgaagttaggcctagggttcttttcactgttagaacccacaacgagttctac
cctgtttacagggaagttaacaggctcgggaagaggttctccttcgtcatggggaaggga
agggcctgcctctacgccgatgaaggcgcagatcctgaggacataaagtgctccctgtgt
gactcctacgttgcgatgttcgtggattccacggagcctccctttacccttctcaaggaa
ctcaaggagagagggagaagggagaagttttgcccctatttctccctgattaactcaacc
agcgtcgccgacgtgattgccgtgacctatccctacgtgttcacgccttggatgtgggag
gcccttggtctggaactagacgacttcgtcctcgtggtggatgaggcccacaacctggat
aacttgaacgagctagcagagaggaagctcagccagcaaatcctcgacctcgccctcaag
gaggttaagagcaaggaggcaatctcgatccttgagagaatcaagagggaactaggtgag
gtggtcctccaagaggagagatacatcaaggtagaggattatcctaaggtggacggacac
gaactcaagctcctgaaggaggaatacgaggacagaaggaacgagatgattgccaacaga
tccataaggaaactccacttgggatcggtgatcaagttctacagctcagatgaggcccca
gtcttctcctaccgtggtcacctggtgatgaagcccctcctctcctcaccatttctgtcg
atcctaaatcgcgacgacctacccgtgatactaatgtcagggaccatgccaccaaaggag
tacctgagcaaggtcctgggaatacagaggcagattctttacctagacgtcgagaaggag
gtgaaggcgaaggtcacagggtcctttgattgtatgcttgcaattgacgtaacctcgtcc
tactccctgaggagccaggagatgtggaagaaatacgccagctacctcctcaggatatat
cacctggccaaggccaacatcctcgcgattttccccagttactccatcatggagaaggtc
atggcccacgtaaaggttgacaagtacgtcgaaggtagcaggacaaacctagaggaggtg
atcggtgagtccggaaagaggaagctcatcattgctggagttgcccggggtaagctctcc
gaggggattgagctaaccagggacggagccagcgtcataagcgacgtcgtcctctgcggt
ataccctatccctcctttgacgattacctgaaacttaggagcgaggccatatacaagtta
acgggacaacctgttagggaggctctcatggagataccggcactcatagcggtgaagcag
gcaatagggagggcaatcaggagcaggcaggaccatgctaccgtctggttactagatagg
aggtttgaaacctcgtggtggaaactaaagataaactgttttaatcccaagaaggtgaaa
ctctag

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