Metallosphaera sedula DSM 5348: Msed_2209
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Entry
Msed_2209 CDS
T00509
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
KO
K03124
transcription initiation factor TFIIB
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Msed_2209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mse03021
]
Msed_2209
Transcription machinery [BR:
mse03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Msed_2209
Prokaryotic type
Archaeal type
TFB
Msed_2209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Cyclin_C
HTH_AsnC-type
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
HTH_24
HTH_Crp_2
Sigma70_r4_2
HTH_11
Motif
Other DBs
NCBI-ProteinID:
ABP96347
UniProt:
A4YIU5
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All DBs
Position
2120932..2121849
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AA seq
305 aa
AA seq
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MSKENSSDTQCPPDKIIFDADRGEYICSETGEVIEERIVDQGPEWRAFTPEEKEKRSRVG
GPLNQTIHDRGLSTLIDWKDKDAIGRNLDPKRRLEVLRWRKWQIRARIQSSIDRNLAQAM
NELERIGNLLGLPKSVKDEGALIYRKAVEKGLVRGRSIESVVAAAIYASCRRMKIARTLD
EIAQYTKANRKEVARCYRLLLRELNVDVPVSDPKDYVTRIGSLLGLSGASMKLAAEILEK
AKNVGLTAGKDPAGLAAAAIYIAALLNEERRTQKEIAQVAGVTEVTVRNRYKELIQELKI
EIQNQ
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggaaaattcatctgatactcaatgcccccctgataaaataattttcgacgct
gacaggggggagtacatatgctctgaaactggtgaagttatagaggaaaggatagtagac
caaggtccagagtggagagccttcactccggaggaaaaggagaaaaggagcagggttggt
ggacccctcaatcagaccatacatgatcgcgggttgtccacactgattgactggaaggat
aaggatgccataggaagaaaccttgacccaaagaggagattggaagtactgagatggaga
aagtggcagattagggccaggattcagagttccatagataggaacctcgcccaagccatg
aatgagctggaaaggattggcaacctgctaggtcttccaaaatccgtaaaggatgagggc
gctctcatttacaggaaggcagttgagaagggtctagtcagaggaagatcaatagagagc
gtcgtagctgcggcaatctacgcttcctgtagacgtatgaaaattgctagaactttggat
gaaatagcgcaatacacaaaggcaaacagaaaggaagtggccaggtgttataggcttcta
ttgagggaacttaacgttgatgttccagttagtgatccaaaggactacgttaccagaata
ggatccttacttgggctcagcggagcatccatgaagcttgccgcagagatattggagaag
gccaagaatgttgggttaacagctggaaaagatccagcaggactggctgcagctgcaatt
tacattgctgcactcctcaacgaggagagaagaacccagaaagagatagctcaggtcgct
ggagtaaccgaagtgactgtcagaaacagatacaaagaacttatccaagagctaaagatt
gaaatacaaaatcaataa
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