Metallosphaera sedula DSM 5348: Msed_2237
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Entry
Msed_2237 CDS
T00509
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mse
Metallosphaera sedula DSM 5348
Pathway
mse04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Msed_2237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mse03019
]
Msed_2237
03009 Ribosome biogenesis [BR:
mse03009
]
Msed_2237
04131 Membrane trafficking [BR:
mse04131
]
Msed_2237
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mse04147
]
Msed_2237
Messenger RNA biogenesis [BR:
mse03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Msed_2237
Ribosome biogenesis [BR:
mse03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Msed_2237
Membrane trafficking [BR:
mse04131
]
SNARE
SNARE associated proteins
Others
Msed_2237
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Msed_2237
Exosome [BR:
mse04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Msed_2237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
TIP49
AAA_14
nSTAND3
AAA_28
RNA_helicase
AAA_18
IstB_IS21
AAA_lid_PRS2_C
Mg_chelatase
Vps4_C
AAA_25
AAA_3
AAA_24
TsaE
ABC_tran
NACHT
AAA_7
Parvo_NS1
DUF815
ATPase_2
AAA_17
NPHP3_N
Sigma54_activat
Zeta_toxin
ATPase
AAA_19
Molydop_binding
AFG1_ATPase
PhoH
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
ABP96375
UniProt:
A4YIX3
LinkDB
All DBs
Position
2141223..2143505
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AA seq
760 aa
AA seq
DB search
MVILDSDMSSNLRLRILEARQKDVGRKIARMTEHTMRRLGIETGDYIELTGPSGTALLQA
MPAYDISDGEIRVDGYVRKTIGVSIGDEVTVKKAKVDPATKVTLAPTQPIRFDQTFVDYV
KEYLMYKPLIKGETISIPIYTGTIDLVVSNTQPSNYVFVTNSTEITIKEEPVREAQVYPR
VTWEDIGDLDEVKEKLREMIELPMKHPELFQHLGIEPPKGVLLYGPPGVGKTLLARALAN
EIGAYFVTINGPEIMSKFYGESEQRLREIFDDADKNAPSIIFIDEIDAIAPKREEVTGEV
EKRVVSQLLTLMDGIKGRGRIVVIGATNRPDAVDQALRRPGRFDREIEIRPPDTKARKEI
LQVHTRNMPLADDVNLDVIAEMTNGYTGADIAALAKEAAMHALRRFINTGDRKKLLEQER
LSPEVLKELKVTMDDFMNAMKFVQPTLLREVYVEVPRVRWSEIGGLENVKQQLREAIEWP
MRFPEVFNKAGIRPPKGVLLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESE
KAIREIFKRARQTAPTVVFFDEIDSIAPMRGMGHDSGVTERMVNQLLSEMDGIVPLSKVV
VIAATNRPDIIDPALLRPGRFDRLIYVPPPDKQARLEILKVHTKSVPLSPDVNLEALAEK
TEGYTGADLEALVREATMISLREIYSKCNTSAEKECKNAKGDGATECYNRVIKSCIDSNA
PNVTSAHFEEAMKVVTPSLTKAQIERYERMAKELKRSALG
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggttatactagattcagatatgtcgtcgaatctgagattgagaatattggaggcgaga
cagaaggacgtgggtcgtaagatagcgcgaatgacggagcatactatgagaagactagga
attgaaacaggggactacattgagcttacagggcctagtggcaccgccctgttgcaggcg
atgccggcttatgatataagcgacggtgaaataagagtagacggttacgttagaaagacc
ataggagtttccattggagacgaagtgacagtaaagaaggctaaggtggatccagccaca
aaagttactcttgctccaacacagcctattcggtttgatcagacatttgtagattatgta
aaggaatacttaatgtataagccccttatcaagggagagacaatctcaattcccatctac
accggtacaatagatctagtcgtatccaacacacaacccagcaactatgtctttgttact
aatagtacagagattacgataaaggaggaaccagttagggaagcccaggtgtatccgaga
gtaacatgggaggacattggagacctagacgaggttaaggagaagttaagggagatgata
gagcttcctatgaaacacccagagttatttcaacacctaggcatagaaccacctaagggt
gtgctactttatggacctcctggagttgggaaaaccttacttgctagagccttggccaac
gagataggcgcttactttgtcactattaacggaccggaaataatgagtaaattctatggt
gaaagtgagcagagacttagggagatctttgatgacgccgacaaaaatgcaccttcaata
atcttcatcgacgaaatagacgccattgccccgaagagagaagaggttactggagaagtt
gagaagagggtggtctcacaattactaacgctcatggacggaataaagggacgcgggaga
attgtggtcataggggctacaaataggccagatgctgtggatcaagcgcttagaagacct
ggtagatttgatagggaaatagagattaggcccccagacactaaggctagaaaggaaata
cttcaggttcacaccaggaatatgcccttagctgatgacgtaaacttggacgtaattgca
gagatgaccaacggttacacgggagcggatatagcagcgttagccaaggaggctgccatg
catgccctgaggagattcatcaacacgggagacagaaagaaactactggagcaagaaagg
ctgtcccctgaagttcttaaggaactcaaagtcaccatggacgacttcatgaatgccatg
aaatttgttcagcccaccttacttagggaagtatatgtggaagtaccaagggttagatgg
tcagagattggtgggttggagaacgtaaaacagcaattacgagaagcaatagagtggccc
atgagatttccagaggttttcaataaagctgggataaggccacccaagggtgtactcctg
tttggcccccctggaactggaaaaaccatgcttgccaaggctgttgcaacggagagtggt
gcaaacttcatcgcagttagaggaccagaggttttatccaagtgggttggggagagcgag
aaggccattagggagatcttcaagagggccagacagactgcacccactgtggtgttcttt
gacgagattgattcaatagcacccatgagaggaatgggacatgatagcggtgttaccgag
agaatggttaatcaattgctctctgaaatggatggaatagtgcccctgagtaaggtagtg
gtgattgcggcaaccaatagacccgatataatagatcctgcattgcttagacctggaaga
tttgataggctaatttacgttcctccaccagacaagcaggctagattagagatcctgaag
gtacacactaaatccgtgccccttagtccagatgttaatctcgaggccctagctgagaaa
accgagggctacactggggctgatctagaggcgcttgttagagaggctacaatgatatct
ttaagggagatttactctaagtgtaacacctccgcggagaaggaatgcaagaatgctaag
ggagatggagctaccgagtgctacaatagagtaattaaatcctgcattgattccaatgct
cccaatgtaacctcagctcattttgaggaggccatgaaagttgtgacgcccagcttgact
aaggcccagattgagagatatgaaagaatggctaaggaactgaagaggagtgccctagga
tga
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