Mesoterricola sediminis: METESE_00290
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Entry
METESE_00290 CDS
T09356
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msea
Mesoterricola sediminis
Pathway
msea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
METESE_00290 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msea03019
]
METESE_00290 (rhlE-2)
Enzymes [BR:
msea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
METESE_00290 (rhlE-2)
Messenger RNA biogenesis [BR:
msea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
METESE_00290 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BDU75071
UniProt:
A0AA48GL39
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All DBs
Position
complement(37727..38998)
Genome browser
AA seq
423 aa
AA seq
DB search
MTFDELGLLPELLRAVSDQGYETPTPVQAQAIPIILSGRDLLAGAQTGTGKTAGFVLPIL
QLLAPDANSSTSPARHPVRCLILTPTRELCMQVEESVRTYGRHLPLRSTSIFGGVNINPQ
VKALRSGVEILVATPGRLLDHHQQGNLNFSHLRFLVLDEADRMLDMGFIRDIRKILALLP
ANRQNLLFSATFSDEIRDLASAFLKSPANVDVARRNAPAELVDQIVHPVARDRKRALLSH
LVRANRMSQVLVFTRTKHGANRLSDQLETDGIASMAIHGNKSQPQRIKALQDFKDGKITV
LVATDIAARGLDIDQLPHVVNYELPYVPEDYVHRIGRTGRAGTEGQALSLVCVDEQKLLK
DIEKLLKRNLPAVVVPGFEPDPAEKPEPIVLGRGGGRGGGRGPRPGGGARPAGSGRGPAR
PRR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgacgaactcggcctactgccggagctgctgcgcgctgtcagcgaccagggc
tacgagacccccacccccgtccaggcccaggccattcccatcatcctctccggccgcgac
ctgctcgccggcgcccagaccgggaccggcaagacggccggcttcgtgctgcccatcctg
cagctgctggcccccgacgccaacagcagcacctcccccgctcgtcaccccgtgcgctgc
ctcatcctcacccccacccgggagctgtgcatgcaggtggaggagagtgtccgcacctac
ggccgccaccttcccctgcgcagcacctccatcttcggcggggtcaacatcaacccccag
gtgaaggccctccggtcgggcgtcgagatcctggtggccacacccggtcgtttgctcgac
caccaccagcagggcaacctgaacttctcccacctgcgcttcctcgtcctggacgaggcc
gaccgcatgctggacatgggcttcatccgggacatccgcaagatcctggccctgctcccc
gccaaccgccagaacctgctcttcagcgccaccttcagcgacgagatccgggacctggcc
agcgccttcctcaagtccccggccaacgtggacgtggcccggcgcaacgcccccgccgag
ctggtggaccagatcgtccaccccgtggcccgggaccgcaagcgcgccctcctcagccac
ctggtccgcgccaaccgcatgagccaggtgctggtcttcacccgcaccaagcacggcgcc
aaccgcctctccgaccagctggagaccgacggcatcgcctccatggccatccacggcaac
aagagccagccccagcgcatcaaggccctccaggacttcaaggacggcaagatcaccgtg
ctggtggccaccgacatcgccgcccggggcctggacatcgaccagctgccccacgtggtg
aactacgagctgccctacgtccccgaggactacgtccaccgcatcggccgcaccggccgg
gccggcacggagggccaggccctcagcctggtctgcgtggacgagcagaagcttctcaag
gacatcgagaagctcctcaagcgcaacctgcccgccgtggtggtgccgggcttcgagccc
gaccccgccgagaagcccgagcccatcgtcctgggccgcggcggcggcaggggcggcggc
cgcggtccccgtcccggcggaggcgcgcgacccgccggctccggccgcggtcccgcccgg
ccccggcgctag
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