Mesoterricola sediminis: METESE_00780
Help
Entry
METESE_00780 CDS
T09356
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msea
Mesoterricola sediminis
Pathway
msea03022
Basal transcription factors
msea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
METESE_00780
09124 Replication and repair
03420 Nucleotide excision repair
METESE_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msea03021
]
METESE_00780
03400 DNA repair and recombination proteins [BR:
msea03400
]
METESE_00780
Enzymes [BR:
msea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
METESE_00780
Transcription machinery [BR:
msea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
METESE_00780
DNA repair and recombination proteins [BR:
msea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
METESE_00780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-ProteinID:
BDU75120
UniProt:
A0AA48GVF2
LinkDB
All DBs
Position
93108..94853
Genome browser
AA seq
581 aa
AA seq
DB search
MIALRPENPLIVQSDRTLLLEVAHPRFEEVRDDLARFAELVKSPEHIHTYRITPLSLWNA
SASGVSCEEMTATLERWSKYPVPQNLLQEIQDHGTRYGRLRLVQRGERLALEMDDRGLFY
ELENQRSLQGLLAEPYPDQRGIFLEEGKRGEAKLQLIRLGHPVQDMAGFKPGDPLPFRLR
DTLAGTGRPFGLRPYQQAAVDVFHAGGGPEGGAGVLVLPCGAGKTVIAIGCMARLQTHTL
VLTTNVTAVKQWKQELLDKTDLRDDQIGLYTGDTKEIRPVTIATYQILTYRKSKGSPFEH
FKLFQAANWGLVIHDEVHMLPAPVFRAVAELQAKRRLGLTATLVREDGKEEDVFSLIGPK
RVDVPWKTLEKDGFIATAHCLEIRVPLPSEERMAYAVADQRARFRIASENSLKLNVLDEL
LAGHPEDSILIIGQYLEQLRIIGERLEAPVLTGQTPEREREDLYRRFREGALRILIVSKV
ANFAIDLPDASVAVQVSGTFGSRQEEAQRLGRILRPKGVRNVSYFYSLISRDTSEQEFAR
NRQLFLTEQGYRYLIESRSLGEDGLSEPAVWKGLLAETGHP
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgccctacgcccggaaaaccccctgatcgtccagagcgaccggaccctgctcctg
gaggtggcgcacccccgcttcgaggaggtccgggacgacctggcccggttcgcggagctc
gtgaagtccccggagcacatccacacctaccgcatcacccccctctccctctggaacgcg
tccgcctcgggcgtgtcctgcgaggagatgaccgccaccctggagcgctggtcgaagtat
ccggtgccccagaacctgctccaggagatccaggaccacgggacccgctacgggcgcctg
cgcctcgtgcagcggggggagcgcctggccctggagatggacgaccggggcctcttctac
gagctggagaaccagcgcagcctgcagggcctcctggccgagccctaccccgaccagcgg
ggcatcttcctggaggagggcaagcggggcgaggccaagctccagctgatccgcctgggc
caccccgtgcaggacatggcgggcttcaagccgggggaccccctgccgttccgcctgcgg
gacaccctggccgggacgggccgacccttcgggttgcggccctaccagcaggcggcggtg
gacgtgttccacgccgggggcggaccggaggggggcgcgggcgtcctcgtgcttccctgc
ggcgccggcaagacggtcatcgccatcggctgcatggcccggctccagacccacaccctc
gtcctcaccaccaacgtcaccgcggtcaagcagtggaagcaggagctcctggacaagacc
gacctccgggacgaccagatcggtctctacaccggcgacaccaaggagatccggccggtg
accatcgccacctaccagatcctcacctaccggaagagcaagggcagccccttcgagcac
ttcaagctcttccaggccgccaactggggcctggtgatccacgacgaggtgcacatgctg
cccgcgcccgtcttccgggcggtggcggagctgcaggccaagcggcgcctgggcctcacc
gccaccctcgtgcgggaggacggcaaggaggaggacgtcttctccctcatcggtcccaag
cgcgtggacgtgccctggaagaccctggagaaggacggcttcatcgccaccgcccactgc
ctggagatccgggtgcccctgcccagcgaggagcgcatggcctacgcggtcgcggatcag
cgggcgcgtttccgcatcgcctccgagaacagcctgaagctgaacgtgctggacgagctg
ctcgccggccatccggaggacagcatcctgatcatcggccagtacctggagcagctccgc
atcatcggcgagcgcctcgaggcgccggtcctcacgggccagaccccggagcgggagcgg
gaggacctgtatcgccgcttccgggagggggccctccggatcctcatcgtgagcaaggtg
gccaacttcgccatcgacttgccggacgccagcgtggccgtccaggtcagcggcaccttc
ggctcccgccaggaggaggcccagcgcctgggccgcatcctgcgccccaagggggtccgc
aacgtctcctacttctacagcctcatcagccgggacacctccgagcaggagttcgcccgg
aaccgacagctcttcctcaccgagcagggctaccgctacctcatcgagagccgcagcctg
ggcgaggacggcctcagcgagccggccgtgtggaagggcctcctggcggagacggggcac
ccctga
DBGET
integrated database retrieval system
