Mesoterricola sediminis: METESE_02420
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Entry
METESE_02420 CDS
T09356
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msea
Mesoterricola sediminis
Pathway
msea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
METESE_02420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msea03021
]
METESE_02420 (rpoC)
03400 DNA repair and recombination proteins [BR:
msea03400
]
METESE_02420 (rpoC)
Enzymes [BR:
msea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
METESE_02420 (rpoC)
Transcription machinery [BR:
msea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
METESE_02420 (rpoC)
DNA repair and recombination proteins [BR:
msea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
METESE_02420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
BDU75284
UniProt:
A0AA48GSC5
LinkDB
All DBs
Position
285156..289382
Genome browser
AA seq
1408 aa
AA seq
DB search
MYPEQQNINAYECIRVTLASPDVIRSWSRGEVTKPETINYRSLKPERDGLFCARIFGPVN
DWECLCGKYKRQKFKGVICDKCGVEVTKKAVRRERMGHIALASPVSHVWFFKGVPSRIGY
LLDIPLKDLERVLYFEAYAVIDPGTTPLKAKEILAEDKYREYKAEYGEGFRAQMGAEAIK
ELLKHVDVEALAIELRHLMKQETSSQKRVKIAKRLKVTEAFKRSGNKPEWMILDVVPVLP
PELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLLELRAPEVIVRNEKRMLQEAVDAL
FENGKRGRLLRGVSNRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKLHQC
GLPKKMALELFKPFIFNRLEHKGHAATIRQAKEMVEQGVPEVWDVLDEVIQNHPVMLNRA
PTLHRLGIQAFQPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPMAQIEARVLMMS
TQNILNPANGRPNVVPSQDIVLGGYYLTKKRKDRKGQGMVFATMNEVVAAHEAKVVDTHA
IIQLRYEGEMVDTEAWHKKDPKKHSEQEVFECPSHEVKRELITTTVGRVIFNRAMPQGLP
YINGLLKKEGLLSLVNRAYKINGPELTIKLLDAMKDIGFLWAMKAGVSVGIDDIVVPDTK
SALLKAASDEVRGIEHEYYHEGKLDAATRYNRILEVWGRTSEQVASDMMKELEKRNETGK
YLNSIYIMADSGARGSKTQIRQVAGMRGLMAKPSGDIIETPITSNFKEGLSVLQYFTSTH
GARKGLADTALKTADSGYLTRKLVDVAQDVIINEDDCGTLDGIVVKAIVNSDGTIRSRLR
DRIMGRVVLDDVLDPYSKAVIVPAGTLLTEELAFHIETSGITSVKIRSVLTCEARRGVCA
RCYGLNLSTGRLVDMGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRTSEKSTHEAQIKG
VVKLDGIRYVEKPGTETTELIAISRSGNILVVDASGNERERYKVAPGAIIRVRDGEEVEP
KTVLAEWDPYNDYLISEKAGIVDFKEFELNASYQEEKDQITGRFRKRVIDPTDDKLHPHI
NIKGDNHKVMQRYNIPTGAYVEVEDGQEVQPGDVLAKTPRQQAKTSDITGGLPRVTELFE
GRKPKDPAIISKITGIVKYGNRVRGNQKVIVENEAGDREEYLIPRGKHIQVQDGDEITAG
EKLTEGAVSPHDILEIQGDKALQAFLLNEVQEVYRAQGVTINDKHIETIIRQMMRWVQIT
DVGDTPLIVDEKVDKHRFKEINEQALKDGGAPATCEPQLLGITKAALTSESFISAASFQE
TTRVLTEAALEGRVDYLRGLKENVILGRLIPAGTGMQLYRNLETEEGQYPEVSDQDALGL
DDFDDEYSRMAQHVEELQGMSEVEGEEL
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgtatcccgagcagcagaacatcaacgcctatgaatgcatccgggtcaccctggcttcg
ccggacgtgatccgctcctggtcgcgcggcgaggtcaccaagcccgagaccatcaactac
cgctccctcaagcccgagcgcgacggcctcttctgcgcgcgcatcttcggccccgtgaac
gactgggaatgcctgtgcggcaagtacaagcgccagaagttcaaaggcgtcatctgcgac
aagtgcggcgtcgaagtcaccaagaaggctgtccgccgcgagcgcatgggccacatcgcc
ctggcctcgcccgtgagccacgtctggttcttcaagggcgtccccagccgcatcggctac
ctcctggacatccccctcaaggacctggagcgcgtgctctacttcgaggcctacgcggtc
atcgatcccggcacgactcccctgaaggccaaggagatcctggccgaggacaagtaccgg
gagtacaaggccgagtacggcgagggcttccgcgcccagatgggcgccgaggcgatcaag
gagctcctgaagcacgttgacgtcgaggccctggccatcgagctccgccacctgatgaag
caggagacctccagccagaagcgcgtgaagatcgccaagcgcctcaaggtcaccgaggcc
ttcaagcgcagcggcaacaagcccgagtggatgatcctggacgtggtccccgtgctgccc
cccgagctgcgccccctggtgcccctcgacggcggccgtttcgccacctccgacctgaac
gacctctaccgccgcgtcatcaaccggaacaaccgcctgaagaagctcctcgagctgcgc
gcccccgaagtcatcgtgcgcaacgagaagcgcatgctccaggaggccgtggacgccctc
ttcgagaacggcaagcgcgggcgcctcctgcgcggcgtctccaaccgccccctgaagtcc
ctcagcgacgccctcaagggcaagcagggccggttccgccagaacctgctcggcaagcgc
gtcgactactccggccgttccgtcatcgtcgtgggtcccgacctcaagctgcaccagtgc
ggcctgcccaagaagatggccctcgagctcttcaagcccttcatcttcaaccgcctggag
cacaagggccacgcggccaccatccgccaggccaaggagatggtggagcagggcgttccg
gaagtctgggacgtcctcgacgaggtgatccagaaccaccccgtcatgctcaaccgcgcc
ccgaccctccaccgcctcggcatccaggccttccagcccgtcctggtggaaggcaaggcc
atccgcctgcaccccctcgtctgcaccgccttcaacgccgacttcgacggcgaccagatg
gccgtgcacgtccccctgagccccatggcccagatcgaggcccgggtgctgatgatgtcc
acccagaacatcctcaaccccgccaacggccgtcccaacgtggtgccctcccaggacatc
gtgctcggcggctactacctcaccaagaagcgcaaggaccgcaagggccagggcatggtc
ttcgcgaccatgaacgaggtcgtcgcggcccacgaggccaaggttgtcgacacccacgcc
atcatccagctccgctacgagggcgagatggtggacaccgaggcctggcacaagaaggat
cccaagaagcactccgagcaggaggtcttcgagtgccccagccatgaggtgaagcgcgag
ctcatcaccaccacggtcgggcgcgtgatcttcaaccgcgccatgccgcagggcctgccc
tacatcaacggcctcctgaagaaggagggcctcctgagcctggtgaaccgcgcctacaag
atcaacgggcccgagctcaccatcaagctgctggacgccatgaaggacatcggcttcctc
tgggccatgaaggccggcgtctcggtgggcatcgacgacatcgtcgtccccgacaccaag
agcgccctcctgaaggccgccagcgacgaggtccgcgggatcgagcacgagtactaccac
gagggcaagctggacgccgccacccgctacaaccggatcctggaagtctggggccgcacc
tccgagcaggtggcctccgacatgatgaaggagctggagaagcggaacgagaccggcaag
tacctcaactcgatctacatcatggccgattccggcgcccgcggttccaagacccagatc
cgccaggtggccggcatgcgcggcctgatggccaagccctccggcgacatcatcgagacg
cccatcacctccaacttcaaggaggggctgagcgtgctgcagtacttcacctcgacccac
ggcgcccgcaagggcctcgccgacaccgccctcaagaccgccgactccggctacctcacc
cgcaagctggtggacgtggcccaggacgtgatcatcaacgaggacgactgcggcaccctc
gacggcatcgtcgtcaaggccatcgtcaacagcgacgggaccatccgttcccgcctccgc
gaccgcatcatgggccgcgtggtgttggacgacgtcctggatccctattccaaggccgtc
atcgtccccgccggcaccctcctcaccgaggagctggccttccacatcgagacctccggc
atcacgtccgtgaagatccgctcggtgctcacctgcgaggcccggcgcggcgtctgcgcc
cgctgctacggcctgaacctctccaccggccgcctggtcgacatgggcgaggccgtgggc
gtcatcgccgcccagtccatcggtgaacccggcacccagctgaccatgcggaccttccac
gtgggcggcgccgcgagccggacctccgagaagtccacccacgaggcccagatcaagggc
gtcgtgaagctggacggcatccgctacgtcgagaagcccgggaccgagaccaccgaactc
atcgccatcagccgttccggcaacatcctcgtggtggatgccagcggcaacgagcgcgag
cgctacaaggtcgcccccggcgccatcatccgcgttcgggacggcgaggaggtcgagccc
aagaccgtcctggccgagtgggatccctacaacgactacctgatctccgagaaggccggc
atcgtcgacttcaaggaattcgagctgaacgccagctaccaggaagagaaggaccagatc
accggccgcttccgcaagcgcgtcatcgatcccaccgacgacaagctgcacccccacatc
aacatcaagggggacaaccacaaggtcatgcagcgctacaacatccccaccggcgcctac
gtcgaagtggaggatggccaggaagtccagcccggcgacgtgctggccaagaccccccgg
cagcaggccaagacctccgacatcaccggcggtctgccccgcgtcaccgagctcttcgag
ggccgcaagcccaaggacccggccatcatcagcaagatcaccggcatcgtgaagtacggg
aaccgcgtccgcggcaaccagaaggtgatcgtcgagaacgaggccggggaccgcgaggag
tacctgatcccccgcggcaagcacatccaggtgcaggacggcgacgagatcacggcgggc
gaaaagctcaccgaaggtgccgtcagcccccacgacatcctggagatccagggcgacaag
gccctccaggccttcctgctcaacgaggtccaggaggtctaccgggcccagggcgtgacc
atcaacgacaagcacatcgagaccatcatccgccagatgatgcgctgggtgcagatcacc
gacgtgggcgacaccccgctgatcgtcgatgagaaggtggacaagcaccggttcaaggag
atcaacgaacaggccctcaaggacggcggcgcccccgccacctgcgagccccagctcctc
ggcatcacgaaggccgccctcaccagcgagtccttcatctccgccgcctccttccaggaa
accacccgcgtcctcaccgaggccgccctcgagggccgcgtggactacctccgcggcctg
aaggagaacgtcatcctgggccggctcattcccgccggcaccggcatgcagctctaccgg
aacctcgagaccgaggaaggccagtatcccgaagtctccgaccaggacgccctgggcctc
gacgacttcgacgacgagtacagccgcatggcccagcacgtcgaggaactgcaaggcatg
agcgaggtcgagggcgaggagctctag
DBGET
integrated database retrieval system
