Mesoterricola sediminis: METESE_03030
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Entry
METESE_03030 CDS
T09356
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
msea
Mesoterricola sediminis
Pathway
msea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
METESE_03030 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msea03021
]
METESE_03030 (rpoA)
03400 DNA repair and recombination proteins [BR:
msea03400
]
METESE_03030 (rpoA)
Enzymes [BR:
msea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
METESE_03030 (rpoA)
Transcription machinery [BR:
msea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
METESE_03030 (rpoA)
DNA repair and recombination proteins [BR:
msea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
METESE_03030 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDU75345
UniProt:
A0AA48GVV1
LinkDB
All DBs
Position
339773..340744
Genome browser
AA seq
323 aa
AA seq
DB search
MLNISDFQRPRFAEVTPGSKTGSYGEFVAYPFERGFATTCGHALRRVLLSSIQGAAVTNV
RIKGVQHEFTALPGVWEDITHILLNLKEIPFKLHSSQPQIVTISHKGEGVVTSGSIRCNQ
NVEVMNPDVHIATLGEDGELEMEIQVSMGRGFVTADRNLDEKLGLGFIPLDSNHSPIVRV
NYMVEPARVGHSTDFEKLTLQVWTNGTVDPKDAVSDSALILREHFLIFARQDEDAVEVEP
GGAILTTEGVNGMLGKSVEELELSVRANNCLRNANITTIGELVQRTEAELMKTKNFGKKS
LQEIKDELARIGLSLGMRIEQEV
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacatcagcgatttccagcggccgcgtttcgcggaggtgactccggggtccaag
acgggctcgtacggcgagttcgtcgcctaccccttcgaacggggcttcgccaccacctgc
gggcatgccctgcgccgcgtgctgctgagcagcatccagggcgccgccgtgaccaacgtc
cgcatcaagggcgtgcagcacgaattcaccgcgctgcccggcgtgtgggaagacatcacc
cacatcctgctcaacctcaaggaaatccccttcaagctccactccagccagccccagatc
gtcacgatcagccacaagggcgaaggcgtggtgacctccggctccatccgctgcaaccag
aacgtcgaggtgatgaaccccgacgtccacatcgccaccctcggcgaggacggcgagctg
gagatggagatccaggtctccatgggccgcgggttcgtcacggcggaccgcaacctggac
gagaagctgggcctcgggttcattcccctggattccaaccacagccccatcgtccgcgtg
aactacatggtcgagcccgcccgcgtcggtcacagcaccgatttcgagaagctcaccctg
caggtgtggaccaacggcaccgtcgatcccaaggacgcggtgagcgattccgccctgatc
ctgcgcgagcacttcctcatcttcgcccgtcaggacgaggatgcggtcgaggtcgagccg
ggcggcgccatcctcaccaccgagggcgtcaacggcatgctgggcaagtcggtggaggaa
cttgagttgagcgttcgggccaacaactgcctgcgcaacgccaacatcaccaccatcggc
gagctggtgcagcgcaccgaggcggagctgatgaagaccaagaactttggcaagaagtcg
ctccaggagatcaaggacgagctcgcccgcatcggcctctccctcggcatgcgcatcgaa
caagaagtctaa
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