Mesoterricola sediminis: METESE_19600
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Entry
METESE_19600 CDS
T09356
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
msea
Mesoterricola sediminis
Pathway
msea02020
Two-component system
msea02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msea00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
METESE_19600
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
METESE_19600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msea03021
]
METESE_19600
Transcription machinery [BR:
msea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
METESE_19600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_31
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BDU77002
UniProt:
A0AA48KE55
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All DBs
Position
2278605..2280170
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AA seq
521 aa
AA seq
DB search
MANLGPQLSQRLTQSQTLALTPAMQLKLKLWQMNLLELSQTIERELGENPLLELLEDGDE
TPTLEALEEGRDSEVAEGAEANAELPEGVDSVDLGPLPDAPAEMDPQADLERFTEEGISQ
VQEIEMGAENSWDLDIPRTSSLPEDERMSWEDRLSSTETLQEHLLAQLYQVMDPDDPRAR
PMEALIDHVDPKGFLRLDPDQPAETSPRELAEDLGIPLDLLTDLLEILQEFDPSGVGCFN
VKESLLLQLRHAGAEPDDLAVRIIQEQSELLSQRDSAKLRKAMGCSEEDLNEALAVLRHL
HPTPGRAFDPENERVVKPDVVVLKGEDGAWKVYLNDETVPRLRVSGEYRHFLAAAEAKDD
KDFIRDKYRSARDFIRGVEDRNRTVLRVSAAIVDLQRDFLEHGIERLRPMVLRDVAEATG
FHESTISRVVKAKTIHTPQGLFDLNYFFSASLGSNSGDDVSATVVKHKIKALVQAEDPAK
PLSDETIAKLLERDGIKVARRTVNKYREEIRIPPASRRRRR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctcggaccgcaactttcccagcgcctcacccagagccagaccctggccctg
accccggccatgcagctgaagctgaagctgtggcagatgaacctgctggagctcagccag
accattgaacgggaactcggcgagaaccccctcctggagctcctggaggacggcgacgag
acccccaccctggaggccctggaggagggccgggacagcgaggtggccgagggggccgag
gccaacgccgaactccccgagggcgtggattccgtggacctgggccccctgccggacgcc
ccggccgagatggacccccaggcggacctggagcggttcaccgaggagggcatcagccag
gtccaggaaatcgagatgggggccgagaacagctgggacctggacatcccccggaccagc
agcctccccgaggacgagcgcatgagctgggaggaccggctcagcagcaccgagaccctc
caggagcacctgctcgcccagctctaccaggtgatggaccccgacgatccccgggcccgg
cccatggaggccctcatcgaccacgtggatcccaagggcttcctgcgcctggatccggac
cagcccgcggagacctccccccgggaactggccgaggacctgggcatccccctggacctg
ctgacggacctgctggagatcctccaggaattcgatccctcgggcgtcggctgcttcaac
gtcaaggagagcctgctcctccagctgcgccatgccggcgccgagccggatgacctcgcc
gtgcgcatcatccaggagcagagcgaactgctcagccagcgggacagcgccaagctccgc
aaggccatgggctgctccgaggaggacctcaacgaggccctcgccgtgctccgccacctc
caccccacccccggccgggccttcgatcccgagaacgagcgggtggtgaagcccgacgtg
gtggtcctcaagggggaggatggcgcctggaaggtctacctcaacgacgagacggtcccc
cggctccgggtcagcggggagtaccgccacttcctggcggccgccgaggccaaggacgac
aaggatttcatccgggacaagtaccgcagcgcccgggatttcatccggggcgtcgaggac
cggaaccggaccgtcctccgggtgtccgcggccatcgtggacctccagcgcgatttcctc
gagcacggcatcgagcgcctgcgcccgatggtcctgcgggacgtggcggaagcgacgggc
ttccatgaatctactatttcgcgtgtggtgaaggccaagacaatccacaccccccagggg
ctcttcgacctgaattacttcttcagtgccagcctgggatccaacagcggggacgatgtc
tccgcgacggtggtcaagcacaagatcaaggcattggtgcaggccgaggaccctgcgaag
ccgctttcggacgagaccatcgccaagctgctggaacgggacggcatcaaggtcgcccga
cggaccgtgaacaagtaccgggaggaaatccggatcccacccgcctcccgtcgccggaga
cggtga
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