Methanolobus sediminis: RE474_04590
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Entry
RE474_04590 CDS
T09570
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mseb
Methanolobus sediminis
Pathway
mseb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RE474_04590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_04590
03009 Ribosome biogenesis [BR:
mseb03009
]
RE474_04590
04131 Membrane trafficking [BR:
mseb04131
]
RE474_04590
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mseb04147
]
RE474_04590
Messenger RNA biogenesis [BR:
mseb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RE474_04590
Ribosome biogenesis [BR:
mseb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RE474_04590
Membrane trafficking [BR:
mseb04131
]
SNARE
SNARE associated proteins
Others
RE474_04590
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RE474_04590
Exosome [BR:
mseb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RE474_04590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_5
TIP49
AAA_2
AAA_22
AAA_14
AAA_33
nSTAND3
AAA_28
AAA_17
Mg_chelatase
Sigma54_activat
IstB_IS21
NPHP3_N
ATP-synt_ab
AAA_18
AAA_7
ABC_tran
RNA_helicase
NACHT
AAA_3
Parvo_NS1
Zeta_toxin
AAA_24
DUF815
ATPase_2
AAA_lid_PRS2_C
PhoH
AAA_19
bpMoxR
TsaE
DUF5906
AAA_30
Cytidylate_kin2
ORC-CDC6-like
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WMW26003
UniProt:
A0AA51ULX0
LinkDB
All DBs
Position
complement(964121..966352)
Genome browser
AA seq
743 aa
AA seq
DB search
MTDEITVKVGQAYPRDAGRGIARLDKTLMQQIGAISGDIIEIKSKEKCYAIVWPGYLEDA
GKDIVRIDGNLRNNAKVGIDDSVTLKKVQVVEAEAITLAPTRETHLVGGARFILRILEGR
PVAKGQNIRVETVNNPISFVVLSTKPSGPVVVTRNTQINLREKAAIAESAAGSVTYEDIG
GLQRELGLVREMIELPLKHPELFNKLGVDPPKGVLLFGPPGTGKTMIARAVASETDANFI
SVSGPEIVSKYYGESEQKLREIFEEAQRNAPTIIFVDEIDSIAPKRDEVVGEMERRIVAQ
LLSLMDGLASRGKVIVIAATNRPNSIDEALRRGGRFDREIEVGIPDADGRLQILYVHTRG
MPLEKDLELKEIAAVTHGFVGADLSSLCKEAAMHALRRLLPELKIDDVEDEIPPEFMEKL
EVTRRDFDEALKNIEPSAMREVFVEVPHVKWDDIGGLEGAKQELAEAVEWPLKYPALFET
VNTKPPRGIMLFGPPGTGKTMLAKAVATESEANFISIKGPELLSRYVGESERAVRETFRK
ARQAAPTIIFFDEIDSMASERGSSIDAHTTERVVSQILTEIDGVEELKDVVIVAATNRPD
IVDPALLRPGRFDRLIYVRPPDKQGREKIFNIHLADKPLAEDVDVDELAEMTEGYVGADI
ESICREASMLALREVITPGISQEEALKKAEGITITYDHFLKAKSRVKPTTSRSVMNFYEQ
AAESFAMYAANEEEQDIDERAYQ
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
ttgacagatgaaataactgtaaaagtaggtcaggcttatccaagggatgcaggcagggga
attgccaggctcgataagactctcatgcaacagatcggtgccataagcggcgatataatt
gagatcaagagcaaggagaaatgctacgcaatagtctggccgggttatcttgaagatgca
ggcaaggacatagtacgcatagacggtaacctgcgtaataacgccaaagtaggtatcgat
gactcagttacactcaaaaaagtgcaggtcgtggaagcagaagctatcacccttgcaccg
acaagggaaactcaccttgtaggaggagcacgtttcatactcaggatactggaaggtcgt
cccgttgcaaaaggacagaacatccgtgtcgagacagtgaacaacccaatttcttttgtt
gtactctccaccaaaccatcaggcccggtggtagtgacccgcaacacccagataaacctg
cgtgagaaagccgccatagcagaatcagccgcaggttctgtcacgtatgaggacatcgga
ggtctgcaacgtgagcttggactcgtgcgtgagatgatagaactcccgctcaagcacccg
gaactattcaacaagctcggcgtcgaccctccaaaaggagtcttgctttttggtccaccg
ggaactggaaagaccatgatcgcaagggcagttgccagcgagaccgatgcaaatttcatc
tccgtaagcggacctgagatagtttccaaatactacggtgaaagcgagcagaagctccgt
gaaatattcgaggaagcccagcgcaacgctccaaccattattttcgtagatgagatagat
tccatcgctccaaaacgagatgaagtagtcggggaaatggaacgcaggatagtcgctcag
ctgctttcactcatggacggacttgcatccagaggcaaggtcatagtcatagccgccacc
aaccgtcccaattccattgatgaagccctgcgccgtggaggaaggtttgaccgtgagata
gaggtaggaattcctgatgcagacggaaggctgcagatcctctacgttcacacaaggggg
atgcctcttgaaaaagaccttgagctaaaggaaatagccgcagtaactcacggttttgta
ggtgctgacctttcctccctgtgtaaagaggctgcaatgcacgccctcaggagactgctc
cctgaacttaagatcgatgatgttgaagacgaaattccgccggagttcatggaaaagctt
gaagtcaccagaagggacttcgatgaagctctgaagaacatcgagccttcagccatgcgt
gaggttttcgtggaagtccctcatgtgaaatgggatgacatcggcggccttgaaggagca
aaacaggaacttgcagaagctgtagaatggcctctgaaatatcctgccctctttgagacc
gtaaataccaaaccaccaagaggaataatgctctttggtcctccgggtaccggaaagacc
atgctcgcaaaggctgttgctacagaaagtgaggcaaacttcatcagtatcaaaggaccg
gaactgctgagccgctacgttggagaatccgagcgggcagttcgtgagactttccgtaag
gcaaggcaggctgcaccaacaataatattcttcgatgaaatcgattcaatggcatcagaa
cgtggatcaagtatcgatgcccacacaaccgagcgtgttgtaagccagattctcaccgag
atagatggagtcgaagaacttaaagacgtagtgatagtcgcagccaccaaccgccctgat
attgtagaccctgcgcttctgcgcccgggaagattcgaccgcctgatatacgtccgtcct
cctgataaacaggggcgtgaaaagatattcaatatccaccttgccgacaagccgcttgca
gaagacgtagacgttgatgaacttgcagagatgaccgaaggttacgttggtgctgatatc
gaatccatctgccgtgaagcttcaatgctggccctgcgtgaagtaataactccgggtatc
agtcaggaagaagccctgaaaaaagcagaaggcataacgataacttatgaccacttcctc
aaagccaaaagccgcgtgaaaccaacaacatcccgcagtgttatgaatttctatgagcag
gctgccgaatcatttgcaatgtatgcggcaaacgaggaagagcaggatattgatgaaagg
gcgtatcagtaa
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