Methanolobus sediminis: RE474_07895
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Entry
RE474_07895 CDS
T09570
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mseb
Methanolobus sediminis
Pathway
mseb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RE474_07895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_07895
03009 Ribosome biogenesis [BR:
mseb03009
]
RE474_07895
04131 Membrane trafficking [BR:
mseb04131
]
RE474_07895
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mseb04147
]
RE474_07895
Messenger RNA biogenesis [BR:
mseb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RE474_07895
Ribosome biogenesis [BR:
mseb03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RE474_07895
Membrane trafficking [BR:
mseb04131
]
SNARE
SNARE associated proteins
Others
RE474_07895
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RE474_07895
Exosome [BR:
mseb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RE474_07895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_5
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_14
AAA_22
AAA_33
TIP49
nSTAND3
AAA_28
IstB_IS21
AAA_7
Sigma54_activat
AAA_18
RNA_helicase
Mg_chelatase
AAA_17
Parvo_NS1
ATPase
AAA_24
NPHP3_N
AAA_3
ABC_tran
PhoH
Zeta_toxin
DUF815
SLFN-g3_helicase
ATP-synt_ab
ATPase_2
NB-ARC
AAA_30
Vps4_C
IPT
KAP_NTPase
DUF6127
Motif
Other DBs
NCBI-ProteinID:
WMW24023
UniProt:
A0AA51UI73
LinkDB
All DBs
Position
complement(1633099..1635336)
Genome browser
AA seq
745 aa
AA seq
DB search
MDEVQIKVEKAHPNDFGRGIIRLDPTTLLSLQLSPGDIVEIEGKRKTAAKVWRAERQDWG
QGIVRIDGFIRQNAGVGIGERITVRKAEVVTATKVILAPPEGVSMEYGDHISEIIKRNIM
KRPLVEGDIIPIISSMTQPMTSQMGGGQAIPLIAVETDPKEEILIIGEFTEIELRQKPVR
GYDGATRGVTYEDIGGLGSEIQRVREMIELPLKHPELFQRLNIEPPKGIILYGPPGTGKT
LIAKAVANESRANFLYIAGPEIMGKYYGESEERIRKIFEEAEDDAPSIIFIDEIDSIAPK
RQNVTGEVERRVVAQLLTMMDGLEERGQVVVIGATNRVDAIDPALRRPGRFDREIEIGVP
DTDDRLEIMQIHTRGVPLAEDVDDEFLDYIAKHTQAFVGADLLALVQEAAMRSLRRALPD
INLEDEDIPQEILDTIVVCKDDFENALREIEPSAMREVLVEVPDVRWDDVGGLDKAKQEI
KEAVEWPLTRPDRFVTMGIKPPKGVLLFGPPGTGKTLMAQAVANESNANFISVKGPQMLS
KWVGESEKAIRETFKKARQVAPCIVFFDEIDSIAPMRSAMSEDSKVSERVVNQLLTELDG
LEPLKEIVVIAATNRPDIIDPALLRSGRFDRMVLVGQSTYSGRKQIFKIHSKNIPLGDDV
TIDELATMTEGFVGADIEAVCREAVMLSLRENFDAETVSMKYFREALNKVRPTLSENLVD
YYEKIQAQFKGGIKKEEASSYIGYR
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagttcagataaaagttgaaaaagctcaccctaacgattttggaagaggaatt
atacgtctggatcctacaacactcctaagcctgcaactatctcccggagatatagttgag
atagaaggaaaaaggaaaacagcagccaaagtatggagggctgaaaggcaggactgggga
cagggaattgtcaggattgacggttttatcaggcagaacgccggagttggaattggtgaa
aggatcaccgtaagaaaagcggaagtagttacggccacaaaagtaattctggcacctcct
gaaggagtttccatggaatatggagaccacataagcgagataatcaaacgtaacataatg
aaacgcccactggtggaaggcgacatcatccctatcataagttcaatgacacagcctatg
accagccagatgggtggcggacaggcaattccacttatcgccgttgaaactgatcctaaa
gaagagatcctcataataggagagttcactgaaatcgaacttcgccagaaacctgttcgt
ggttatgacggtgcgacccgtggagttacctacgaagatattggcggactcggttcagag
atacagcgtgtcagggaaatgatagagcttccactcaagcaccctgaactattccagaga
cttaatatcgaacctccaaagggaattattctctacggaccaccgggaacaggtaaaaca
cttattgcaaaagcagttgcaaatgagtcaagagcaaacttcctctatattgcaggccct
gagatcatgggtaaatactacggagagagcgaagagcgcatccgtaagatattcgaggaa
gctgaggatgacgcaccttcaatcatatttattgatgagatagattctattgcaccaaaa
agacagaacgtcaccggagaagttgagcgcagagttgtagctcagttgcttacaatgatg
gacggccttgaggaaagaggacaggtcgttgtaataggtgctacaaaccgtgttgatgca
atcgacccggcactcagaagaccaggaagatttgacagggaaatcgagataggagtccct
gataccgatgaccgtctggaaatcatgcagattcacacacgtggtgtacctcttgcagaa
gatgttgacgacgagttccttgactatatcgcaaaacacacacaggcatttgtaggggca
gaccttctggcgcttgtccaggaagctgcaatgcgctctttgagaagagcactgcctgat
atcaatcttgaagatgaagacatcccgcaggagatactggacaccattgttgtctgtaag
gatgactttgagaatgcactgagagaaatagagccttcggcgatgagagaagtgcttgta
gaggttcctgatgtcagatgggatgatgtcggaggactggacaaagccaagcaggagatc
aaagaagctgtggaatggccgctcacaagacctgacaggtttgtgaccatgggaatcaaa
cctcctaagggagttctgctattcggaccacccggaaccggtaaaacactgatggcccag
gctgttgcgaatgagtcaaatgccaactttattagtgtaaaaggaccgcagatgctgtcc
aaatgggtaggagaatctgaaaaggccatcagggagacattcaagaaagcaagacaggta
gctccatgtattgtattctttgatgagatagattctattgcaccgatgagaagtgctatg
tcagaggattcaaaggtctcagaaagagtagtgaaccagcttctgacagagctggatggt
cttgagccgttgaaggaaatagtagtgattgccgcaaccaacagaccggacataattgac
cctgcacttttgagatccggaagatttgacaggatggttcttgttggacagtccacctat
tccggaagaaaacagatattcaagatccattcaaagaacattcctcttggagatgacgtt
acaattgatgaacttgcaaccatgacagaaggatttgtaggggcagacattgaagcagta
tgccgagaagctgtaatgctttcactgagagagaactttgatgccgaaactgttagtatg
aagtacttcagagaagctcttaataaggtcagacccacactgtccgagaatctggtagat
tattatgagaaaatacaggcacagttcaagggcggcatcaagaaagaagaagcaagttct
tatataggatacagataa
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