Methanolobus sediminis: RE474_08475
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Entry
RE474_08475 CDS
T09570
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
mseb
Methanolobus sediminis
Pathway
mseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE474_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_08475
Messenger RNA biogenesis [BR:
mseb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RE474_08475
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
RE474_08475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
HypA
Auto_anti-p27
Zn_Tnp_IS91
Trm112p
NOB1_Zn_bind
DZR
Zn-ribbon_8
OrfB_Zn_ribbon
TF_Zn_Ribbon
zf-C3HC4
Motif
Other DBs
NCBI-ProteinID:
WMW24131
UniProt:
A0AA51YI45
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All DBs
Position
1733724..1734407
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AA seq
227 aa
AA seq
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MDDSVEEKGQGRKRRSGKRDNKPDEGSTEDDDMDDEEELSTEESVFVMPGDFVGTTEEFR
AGAGTYVNVADIHSLNTGYVKVDRKSRTISIVPQTSIPPEIKEGDIVIGSVVNMRDSVAL
VEIGAIKGKGEREFQTNGAAAIHVSNVKDSYVKNLGYEFSLSDVVKAKVINTQNMRLSTD
DKSLGVMKAYCSRCHSPLVKDSKKLKCPECGRTETRKLSADYGTGIV
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtggatgactctgttgaagagaaaggacagggccgtaaaagaaggtcaggaaagagagat
aataagcccgatgaaggatcaacagaagatgatgatatggatgatgaagaggaacttagt
acagaagaatctgtatttgtaatgcctggtgattttgtaggaaccactgaagagttcagg
gcaggcgcaggaacttatgtcaacgttgcagatattcactcacttaacacaggatatgta
aaagttgacagaaaatcaagaacaatctctatagtacctcagacaagcattcctcctgag
atcaaggaaggcgatattgttatcggaagcgttgtcaatatgcgtgattcagtggctctt
gtcgagatcggtgcaatcaaaggaaagggagagcgtgagttccagactaatggtgctgca
gcaatccatgtatccaacgtgaaggattcctatgtcaaaaaccttggctacgagttttca
ctttctgatgttgtgaaggcaaaggtcattaatactcagaacatgcgtctgagcacagat
gacaagtccctcggagttatgaaggcatattgttcaaggtgccacagcccactggtaaag
gacagtaagaaactgaaatgtcctgaatgtggccgcacagagacaagaaagctctctgca
gactacggaaccggaatcgtttaa
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