Methanolobus sediminis: RE474_09210
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Entry
RE474_09210 CDS
T09570
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mseb
Methanolobus sediminis
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mseb03016
]
RE474_09210
Enzymes [BR:
mseb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RE474_09210
Transfer RNA biogenesis [BR:
mseb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RE474_09210
Prokaryotic type
tRNA splicing ligases
RE474_09210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF993
Motif
Other DBs
NCBI-ProteinID:
WMW24272
UniProt:
A0AA51UJ92
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All DBs
Position
1865233..1866699
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AA seq
488 aa
AA seq
DB search
MSDKNTTSILDILTKVNDNTWEVPGNYKPGMNVPGRIFVSKPLLEILEPETIDQVANVAS
LPGIQKYSMAMPDAHLGYGFSIGGVAAFDKDEGVISPGGVGFDINCGVRLIRSNLMEDDV
RPRLAELLDSLFEAIPSGVGSKSRMRLTDEELDDVFIHGVNWAVKNGYGMKGDLSHCESN
GMMPGADPSKVSIKARKRGRPQIGTLGSGNHFLEVQYVDKVYDEEAAKAFGLKEGQITFM
IHCGSRGAGHQICTDHLQKLTQASKKYKIPLPDKQLACAPASSEEAQDYFKAMICAANYA
WVNRQMIMHWAREVFDEFFKAQHGDLGLDLVYDVAHNVAKLEKHMIDGEEKEVYVHRKGA
TRAFPAGHPEIPEDYKDIGQPVIIPGSMGTASYVLKGCPAAMELTFGSACHGAGRVMSRS
SAKKELRGEEIQNELKSQGIIVRATQPSLIAEEAPEVYKSSSDVVDVVHNLGIATKVARV
LPMGVVKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaatacaacatcaattctcgatattctcacaaaagtaaatgataataca
tgggaggtgcccggtaattacaaaccagggatgaatgttcctggaaggatattcgtatca
aaacctctccttgaaattctggaacctgaaaccatcgatcaggtcgcaaatgtagcttcc
ctgccaggcatccagaaatactccatggcaatgccggatgcacatcttggttatggtttc
tccattggcggagttgcagcttttgataaagatgaaggtgtgataagtccgggaggtgtg
ggttttgatatcaactgcggagtccgtctcattcgctccaatctcatggaagatgatgtc
cgtccaagacttgctgaacttctcgattcattgttcgaagcgataccttccggtgttggt
tccaagagtcgcatgaggcttactgatgaggaactggatgacgtattcatccacggagtg
aactgggctgttaagaatggctatggtatgaaaggagacctcagccattgtgagagcaat
ggaatgatgccaggtgctgatccatcaaaggtcagtataaaagcccgcaaaagaggccgt
ccgcagataggaacccttggaagtggaaaccatttccttgaagtgcagtatgtggataag
gtctatgacgaggaagctgcaaaggctttcggtcttaaggaaggacagatcactttcatg
atccactgcggttcacgtggagcaggtcatcagatatgcactgaccatctccagaagctt
actcaggcttctaagaagtataagattcctttacctgacaaacagcttgcatgtgcccct
gcaagttctgaggaggcgcaggattatttcaaggcaatgatatgtgcggcaaactatgca
tgggtaaaccgccagatgataatgcactgggctcgcgaggtctttgatgagttcttcaag
gctcagcatggtgacctgggacttgaccttgtgtatgatgttgctcacaatgttgcaaag
cttgagaaacacatgatcgatggcgaggaaaaagaagtctatgtccacaggaaaggtgca
acacgcgcattccctgctggtcatcctgagattccggaagattacaaagacattggacaa
ccggtcataattcctggaagtatgggaacagcatcctatgtcctgaaaggctgccctgct
gccatggaacttactttcggcagcgcctgtcatggtgcaggaagggttatgagtcgaagc
agtgctaagaaagagctgcgcggtgaagagatccagaatgaactgaagtcacagggaatt
attgtaagagcgacacagccatcactgattgctgaggaagcgccagaggtctacaaatcc
agcagtgatgtagtggatgtcgtacataaccttggcattgctacaaaagttgcacgtgta
cttccaatgggagttgtcaaaggttga
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