Methanolobus sediminis: RE474_10825
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Entry
RE474_10825 CDS
T09570
Symbol
rrp42
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
mseb
Methanolobus sediminis
Pathway
mseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE474_10825 (rrp42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_10825 (rrp42)
Messenger RNA biogenesis [BR:
mseb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RE474_10825 (rrp42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
RE474_10825 (rrp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
WMW24569
UniProt:
A0AA51YL36
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All DBs
Position
2176630..2177412
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AA seq
260 aa
AA seq
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MGNEVMSVLKKDYIYNLMLKGQRADGRAFDEIRDIEIRTNVIEKAEGSAWIKMGGTEILV
GVKLQVGTPFPDSADQGVIITSMELNPIASPDFEAGPPKENAIEMARVTDRGIRESGAID
LNKLCITEGEEVWMVFIDIHVLNNEGNIQDVSSLGAIAALLTAVVPGEREGRGEDMPMPI
RDMPISVTLVDIGGEMMVDPDLDEETVCDTRITIVSNQDGSISGMQKSGDGALTEEKLLK
AVSLACQKASELREAHLLNI
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgaagtaatgtcagtacttaagaaagattacatttacaaccttatgctcaaa
ggtcagcgtgctgatggacgtgcttttgatgagataagggatattgagatcagaaccaat
gttatagaaaaagctgaaggttccgcctggataaagatgggtggtaccgagatccttgta
ggagtaaaactacaggtaggtacacctttccctgactctgctgatcagggtgtcattatt
acaagtatggaactaaatccgatagcttctcctgattttgaggcaggtcctccaaaagag
aatgccattgaaatggcccgtgtcaccgacaggggaatccgtgaatcaggcgcaattgat
ttaaacaagttgtgtattacggagggagaagaagtctggatggtattcatagatatccat
gttctcaacaatgagggtaatattcaggatgtgtcctctctgggcgcaatagctgccctt
ctgactgccgttgttcctggtgaacgcgaaggccgtggtgaggacatgccaatgcctata
agggatatgcctatttcagttacgctggtagacatcggcggtgagatgatggttgatcct
gaccttgatgaagaaactgtttgtgacacccgcataaccattgtttcaaatcaggatggc
tctatatcaggaatgcagaagagcggcgatggcgcacttaccgaggaaaagctgttaaag
gctgtgtcacttgcctgccagaaagcatctgaactcagggaagctcacctgttgaatatc
tga
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