Methanolobus sediminis: RE474_13110
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Entry
RE474_13110 CDS
T09570
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mseb
Methanolobus sediminis
Pathway
mseb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mseb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RE474_13110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mseb03019
]
RE474_13110
03009 Ribosome biogenesis [BR:
mseb03009
]
RE474_13110
Enzymes [BR:
mseb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RE474_13110
Messenger RNA biogenesis [BR:
mseb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RE474_13110
Ribosome biogenesis [BR:
mseb03009
]
Prokaryotic type
rRNA helicases
RE474_13110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
CMS1
AAA_30
AA9
Helicase_C_2
AAA_22
PhoH
Motif
Other DBs
NCBI-ProteinID:
WMW25002
UniProt:
A0AA51YLJ8
LinkDB
All DBs
Position
2650690..2651982
Genome browser
AA seq
430 aa
AA seq
DB search
MESSSFKDLHLSRNLEKAIEELGFEEPTPIQAQSIPFIIEGRDVIGQAQTGTGKTAAFGI
PALEMVNPNSKKTQVLVLCPTRELANQVAEEMGKLAKYLNVHILPVYGGQNIDRQIKALR
KGVQIVIGTPGRVMDHIERNTLKLNGVDMIVLDEADEMLDMGFREDIETILSSVPETRQT
IFFSATMPKPIMRLTKQYQQNPMHVKTIHKVVTAPNMEQSYFEVKHHMKPDVLCRMIDIY
DVKSCLVFCNTKKMVDDLVTTLKTRGYLADGLHGDMKQTQREKVMASFRKGEIETLVATD
VAARGIDVENIEVVFNFDMPQDEESYVHRIGRTGRAGRQGIAFTFVTAREIYKIKSIQKY
TKTKIQCKKVPTRSDAEEIKAGMLATRVKETIDEGHLGKYVHWVEKMLDEDCTTMDIAAG
LVKIMLAENR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaatcatcaagttttaaagaccttcatttatcacgaaatctcgaaaaagcaattgaa
gaactgggttttgaggagccaacgcctattcaggctcagtcaataccttttattattgaa
ggtagggatgtcatcggacaggcccagacaggtacaggaaaaactgcagcatttggaatt
cctgcccttgaaatggtaaaccctaacagcaagaagacacaggtacttgtcctctgtcct
acaagggaacttgcgaatcaggttgcagaagagatgggcaaacttgccaagtatcttaat
gtacatatactcccggtttacggcggacagaatattgacagacagatcaaggctctcaga
aaaggtgtccagatagttatcggtacccctggaagggttatggatcacattgagagaaat
acactgaagcttaacggcgtagacatgattgtgctcgatgaagcagatgaaatgctggat
atgggtttcagggaagatattgaaacaatactcagtagtgttcctgagacaaggcagacg
atttttttctctgctacaatgccaaagccaattatgaggctgacaaagcagtatcagcag
aacccaatgcatgtgaagacaatacacaaggtagttactgcgccaaacatggaacagtcc
tattttgaggtcaagcatcacatgaagcctgatgttctttgcagaatgatagatatctat
gatgtgaaatcatgtcttgtattctgtaatacaaaaaagatggttgatgaccttgttact
actctaaagaccagaggatatcttgcagatggtcttcacggcgatatgaagcagacccag
agagaaaaagtaatggccagcttcaggaaaggtgagatagagacacttgttgctactgat
gtggctgcacgtggtatcgatgtggagaatattgaggttgtattcaattttgatatgcca
caggatgaagaatcatatgttcacaggatcggaaggactggtcgtgcaggaagacaggga
attgcatttacttttgtcactgcaagggagatctacaagatcaagagcatccagaaatac
accaaaaccaagatacagtgcaagaaggttcctaccagaagtgatgccgaagagatcaag
gcaggtatgcttgcaaccagggtcaaggaaaccattgatgaaggacatcttggcaaatat
gtccactgggtggaaaaaatgcttgatgaagattgtactaccatggatattgcggcaggt
ctcgttaagatcatgcttgctgagaacaggtaa
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