KEGG   Marinobacterium sediminicola: LN244_00405
Entry
LN244_00405       CDS       T07998                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
msec  Marinobacterium sediminicola
Pathway
msec03030  DNA replication
msec03410  Base excision repair
msec03420  Nucleotide excision repair
msec03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:msec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LN244_00405 (polA)
   03410 Base excision repair
    LN244_00405 (polA)
   03420 Nucleotide excision repair
    LN244_00405 (polA)
   03440 Homologous recombination
    LN244_00405 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msec03032]
    LN244_00405 (polA)
   03400 DNA repair and recombination proteins [BR:msec03400]
    LN244_00405 (polA)
Enzymes [BR:msec01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LN244_00405 (polA)
DNA replication proteins [BR:msec03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LN244_00405 (polA)
DNA repair and recombination proteins [BR:msec03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     LN244_00405 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LN244_00405 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5 HHH NYN_YacP
Other DBs
NCBI-ProteinID: ULG69309
LinkDB
Position
88498..91242
AA seq 914 aa
MSEQHAPVILVDGSSYLYRAFFASQQADLRTADGMPTGAIRVVTSMLKRLLKDYPDSPVA
VIFDAKGKTFRDEIYAEYKSHRPPMPDDLRSQVEPIHAIIRAMGLPLFVEEGVEADDVIG
TLARQASESGRAVIISTGDKDMAQLVDEHVTLINTMNDTRMDVAGVEEKFGVPPHLVIDL
LALQGDKVDNIPGVPGVGEKTALALLQGIGGISDLYQNLDKIPELGFRGAKSMPKKLEEN
REAAELSYLLATIKTDVPLHISLHDITLPTPEPEQLLALFKQFEFKSWVRELEAGDADEL
GADEPVAAADAIETEYEAVLTQAAFDSWLEKLKAAGEFAFDTETTSLNYMEAQLVGVSFS
VEPGKAAYVPLAHDYMGAPEQLDRVSALAQLKPLLEDPELKKIGQHIKYDMNVLRHYGIE
LQGIGADTMLESYVLNSTASRHDMDTLADRHLGVTTTRFEDIAGKGKKQLTFNQIELEQA
APYAAEDADITLRLHQKLQPQLAAEEALLQVFEEIERPLIPVLSRMEFRGALVDARILGE
QSQELELRLNEIEKEAFDLAGEEFNLNSTKQLQAILFDKMGLPVKKKTPKGAPSTAEEVL
QDLALDYPLPKLLIEQRGLSKLKSTYTDKLPLMINPATGRIHTSYHQAVTATGRLSSSEP
NLQNIPVRTKEGRRIRNAFIAPAGYKIVAADYSQIELRIMAHLSGDEGLLNAFRHGEDIH
KATAAEVFGTTVDKVTADQRRSAKAINFGLIYGMSAFGLAKQLGIGNKEAGTYIDHYFAT
YPGVQRYMDETRAQARGQGYVETLFGRRLYLPDINNRNPMKRQAAERTAINAPMQGTAAD
IIKRAMIAVDHWLEQGDMDARMIMQVHDELVFEVRESEVDRFCQQVKPLMEQAADLAVPL
LIEAGVGDNWEQAH
NT seq 2745 nt   +upstreamnt  +downstreamnt
atgagcgaacagcacgccccggtcattctggtggatggctcctcttacctttaccgcgcc
ttctttgcctcacagcaggcggatctgcgtaccgctgacggtatgcccaccggtgccatc
cgtgtggtgacttcgatgctcaagcgcttgctcaaggattatcctgacagccccgtcgcg
gtgatcttcgatgccaaaggcaaaacctttcgtgacgagatctatgctgagtataagtca
caccgtccaccgatgccggatgatctgcgtagccaggtagagcctatccacgccattatc
cgtgccatggggctgccgctgtttgtcgaggaaggtgttgaagcggatgacgtcattggc
acgctggcacgtcaggccagtgagtccggtcgagccgtcatcatctcgaccggtgacaag
gatatggcccaattggtggatgagcacgtcacgctgatcaataccatgaatgacaccaga
atggatgtggccggtgttgaggagaagttcggtgtgccgccgcacctggtcattgacctg
ttggcactgcagggggacaaggtggacaacatccccggcgtgccgggggtcggagaaaag
accgcgctggcactgctgcagggtatcggtggtatcagcgacctgtaccagaatctggac
aagattcccgagctgggtttccgtggcgccaagtcgatgccgaagaagctggaggaaaac
cgggaagcggctgagctgtcctacctgttggcgaccatcaagaccgatgtgccgctgcat
atttctctgcacgatataacgttgccgacacccgagcccgagcagttgctggcgctgttc
aaacagttcgagttcaagagctgggtccgtgagctggaagcgggcgatgccgatgagctg
ggggccgatgagccggtagctgccgcagatgccatagaaaccgaatacgaagccgtgctg
acgcaggctgcattcgatagctggctggagaaactcaaggctgccggcgagtttgccttt
gataccgaaaccaccagcctcaattacatggaagcacagctggttggcgtgtccttctct
gtagaaccgggcaaagctgcttatgtgccgctggcgcatgactatatgggcgcaccggag
cagctggaccgagtatctgcgttggcgcagctcaagccgttgctggaagatccggagctg
aaaaagatcggtcagcacatcaagtacgacatgaacgtgctgcgccactacggtattgag
ctgcagggaattggtgccgataccatgctggagtcctatgtgctcaattccaccgccagc
cgccatgacatggatacgctggccgaccggcacctgggcgtcaccacgacccgctttgag
gacattgccggcaagggcaagaagcagcttaccttcaatcagattgaactggagcaggcg
gcaccctatgcggcagaagatgccgatattaccctgcggctgcatcagaaattgcagcca
cagctggcggcagaggaagcgttgcttcaagtctttgaggagatcgagcgtccgctgatt
ccggtgctttcacgcatggagttccgtggggctctggtggatgccagaattctgggtgag
cagagccaggagctggagctgcgcctgaacgagatcgaaaaggaagcctttgatctggcc
ggtgaagagttcaacctcaactcgaccaagcagttgcaggcgatcctgttcgacaagatg
ggcctgccggtaaagaagaagacgcccaagggggcgccttccaccgcggaagaggtactg
caggacttggcgctcgactatccgctgccaaaactgttgatcgagcagcgtggcctgagc
aagctcaaaagcacgtataccgacaagctgcccctgatgatcaatccggctactggtcgc
atccatacctcgtaccatcaggcggtcactgccaccggtcgtctgtcgtcatccgagcca
aacctgcagaacatcccggtgcgtacaaaggaaggccgccgtattcgtaacgcctttatc
gcaccggcagggtacaaaattgtcgcagcggattattcacagattgagctgcgcatcatg
gcacatctgtcgggcgacgaaggattgttaaatgctttccgtcacggtgaagatatccac
aaggcaacggccgcggaggtgttcggtacgactgtggataaggtgactgccgatcaacgt
cgcagtgccaaggcgatcaactttggcctgatctacggcatgtcagccttcggccttgcc
aagcaattggggatcggtaataaggaagcgggtacctatatcgaccattattttgctacc
tacccgggcgtgcagcgttacatggatgagacccgtgcccaggcacggggccagggctat
gtcgaaaccctgttcggacgccgtctgtacctgccggatatcaacaaccgtaacccgatg
aagcgtcaggccgcggagcgcaccgcaatcaatgctccgatgcagggtactgcagccgat
atcatcaagcgggcgatgatcgcggtcgatcactggcttgaacagggggacatggacgcc
cgcatgatcatgcaggtacacgatgaactggtattcgaagtgcgtgagtctgaagtcgat
cgtttctgccagcaggtgaaaccgctgatggagcaggcagccgatctggcagtaccatta
ctgatagaggccggtgtcggagataactgggagcaggcgcactga

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