Marinobacterium sediminicola: LN244_01955
Help
Entry
LN244_01955 CDS
T07998
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03410
Base excision repair
msec03430
Mismatch repair
msec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LN244_01955 (recJ)
03430 Mismatch repair
LN244_01955 (recJ)
03440 Homologous recombination
LN244_01955 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_01955 (recJ)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LN244_01955 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LN244_01955 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LN244_01955 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ULG69603
LinkDB
All DBs
Position
415487..417220
Genome browser
AA seq
577 aa
AA seq
DB search
MSVSDPIIEQRPLQVDPAHPNLSALDPVLARIYAARGIDDPEQLGRRLQELLPDSQMKGV
PAAVERLLVAFEQRQKILIVGDFDCDGATSTSVAVLGLRMLGVAEVDYLVPNRFEYGYGL
SPEIVEVAAKSQPDLVITVDNGISSIEGVARAKALGIDVIVTDHHLAGAELPEACAIVNP
NQPGCDFIAKSTCGVGVIFYVLIALRRALNERGWFNGQPPNLAALLDLVALGTVADVVPL
ERNNRALVWQGLQRIRAGQARPGLLALIEVSGRRRDRIVASDLGFAIAPRLNAAGRLEDM
SIGIECLLEENYDRALSMARELDELNRERRGIEQEMQQQALELLGQLSLNDQELPFGLCL
YDEYWHQGVIGILASRIKERVHRPVIAFAPGDEGEIKGSARSINGFHIRDGLDAVAARHP
GLLKKFGGHAMAAGLTIAADDLAAFSDAFDAEVRRQLNAEDLTQRILTDGELPETAFSME
LAEALRNAGPWGHQFPEPLFEGRFHLLQQRIVGQRHLKLVVMPEGGTLALDAIAFNVDTL
VWPDESVQKVRLVYRLDVNEFRGQRSLQLMVDWIGTD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatccgatccgatcatcgaacaacggccactccaggtcgatcccgcccaccct
aatctgagcgcgctcgatcccgtgctggcccgcatttacgccgcgcgtggtatcgatgat
cccgagcaactggggcgtcgtttgcaggaactgctgccggatagccagatgaaaggggtt
cctgcggcagtggagcgtttgctggtcgcattcgagcagcgccagaaaatactcatcgtc
ggtgacttcgattgtgatggtgccaccagtaccagtgtggcagtactggggttacgcatg
ctgggcgtggccgaggtggactatctcgtgcccaaccgcttcgagtacggctatggcctc
agtcccgaaattgttgaggtcgcggcaaaaagccagccggatctggtgattaccgtggat
aacggcatctccagcattgagggggtggcgcgcgccaaggcgctgggcattgacgtgatc
gttaccgatcatcacttggccggggccgagctgcccgaggcctgtgccatcgtcaacccc
aaccagccgggctgcgattttattgccaagtccacctgcggtgtgggcgtgattttctat
gtgctgattgcgctgcgccgcgccctgaatgaacgtggctggttcaacggtcagccgccc
aatctggcggccctgctggatctggtcgcgctgggcacggtagcggacgtggtaccgctg
gagcgcaacaaccgcgcgctggtgtggcaggggctgcagcgtatccgtgccggtcaggcg
cggcccggcttgctggcgctgatcgaagtgtccggccgtcgtcgtgaccgcatcgttgcc
agtgacctgggctttgccatcgcaccaaggctgaatgccgccggacgtctggaagacatg
tcgatcggcatcgaatgtctgctggaagagaactacgaccgcgcactgtcgatggcccgt
gaactggatgagctcaatcgagagcgccgcggtattgagcaggaaatgcagcagcaggca
ctggagctgctgggacagctgagcctgaatgatcaggagctgccgtttggcctgtgtctg
tatgacgaatactggcatcagggcgtgataggcattctggcctcgcgcatcaaggagcgg
gtgcaccgaccggtgatcgccttcgcccccggtgacgagggcgagatcaagggttcggcg
cgttcgatcaacggttttcatatccgtgacggcctcgatgccgtggcggccaggcatccg
ggcctgctgaagaagttcggtggtcatgccatggcagccggtctgaccatcgccgccgat
gatctggcggccttcagcgatgccttcgatgccgaagtgcgtcgtcaactgaacgccgaa
gacctgacccaacgcatcctcaccgatggcgagttgccggaaacagcgttcagcatggaa
ctggcagaagcgttgcgcaacgcgggtccctgggggcatcagttccccgagccgctgttc
gagggccgcttccacctgctgcagcagcgcatcgtcggccagcgccacctcaagctggtg
gtgatgcccgaaggcggcaccctagcgctggatgccatcgctttcaatgtggatacgctg
gtgtggccggatgagtcggtacagaaggtgcgcctggtgtaccggctggacgtgaatgaa
tttcgtggccaacgcagtctgcagctgatggtggactggatcggcacggactga
DBGET
integrated database retrieval system
