Marinobacterium sediminicola: LN244_02425
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Entry
LN244_02425 CDS
T07998
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03030
DNA replication
msec03430
Mismatch repair
msec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LN244_02425 (dnaE)
03430 Mismatch repair
LN244_02425 (dnaE)
03440 Homologous recombination
LN244_02425 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msec03032
]
LN244_02425 (dnaE)
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_02425 (dnaE)
Enzymes [BR:
msec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LN244_02425 (dnaE)
DNA replication proteins [BR:
msec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LN244_02425 (dnaE)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LN244_02425 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ULG69697
LinkDB
All DBs
Position
514065..517565
Genome browser
AA seq
1166 aa
AA seq
DB search
MSDPGFIHLRVHSEYSLFDGLVRIKPLVSTAAAQQMPAVAITDQTNLFALVKFYKAALGA
GVKPICGVDLWVQNPAEPDGEPFRLTLLVRNGQGYRNLMELVSRAYAEGQNIIPEWALVK
KEWIKEKAEGLIALSGARLGEVGRALLSGAPDQAEAVLAEWQEVFPDSFYLEIQRTGRSG
DEALVHASVELAAKTGCPLVATNEVMFLKQEDFEAHEARVCINLGRTLDDPQRPRNYSDQ
QYFRSAEEMAELFSDIPSALENTVEIARRCNIEIELGTYYLPRFPVPEGMLMDDFFRQVS
WDGLEERLDFLLDKAAPDYQERRKPYEERLKFELDIIIQMGFPGYFLIVMDFIKWAKENG
IPVGPGRGSGAGSLVAYVLKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVI
DYVARTYGRDAVSQIITYGTMAAKAVVRDVARVQGKPFGLADRLSKLIPFEVGMTLSKAW
EQEEALRDFVNGSEEAEEIMEMAYKLEGITRNVGKHAGGVVIAPTKLTDFAATYCDEEGQ
GLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWALDTINRKRQKAGEEPLEIESIDLEDPP
TFKLLQSAQTTAVFQLESSGMKDLIRRLQPSRFEDIVALVALFRPGPLQSGMVDDFINRK
HGRAPLAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK
KPEEMAKQRAVFLEGCANQGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK
QHYPAAFMAAVLSSDMQNTDKVVIFIEECRQMGLKVRLPDVNDGEYMFTVNDADEVVYGL
GAVKGVGEGPVDAIVQARREGGPFKDLFDFCERVGAGKLNKRVLEALVRCGALDSLGPSR
AVLWEAIASALKAADQSARNADAGIMDMFGAVEAESPSDPYAEFGKARDWTDKERLQGEK
DTLGLYVTGHPIDEYETELKHLVSRKLVELQPSRGSTQKMAGLVVDMRLKKTKKGDNLCF
LTLDDRSARMEVTLFGDTYEEARNLINKDAVLVVEGEVAQDDYNGGLKVRCNKVSSMAQV
RAQAARCVEICCERRQMNQQGLRQLGNTLRQHRSPLISLAVALHYRREDAEARLWLDSQW
ATAPTDELLLQLKEQFGNEAVRLCYD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcctggttttattcaccttcgggtgcactccgaatattccctgttcgatggt
ttggtacgcatcaagccgctggtgtctacggctgcggctcagcaaatgcctgctgttgcg
attactgaccagaccaacctgttcgcgctggttaaattctacaaggctgcgctgggggca
ggtgtcaagccgatttgtggtgtggacctatgggtccagaatccggctgagccagacggt
gagcctttccggctaaccttgctggtgcgcaatggtcagggctatcgcaatctgatggag
ctggtgtctcgcgcgtatgccgaaggtcagaacatcattcccgaatgggcgctggtaaaa
aaagagtggatcaaggaaaaggctgaagggctgattgcactctccggtgcgcgcctgggt
gaagttgggcgtgcgttgttgtcgggggcgcctgatcaggccgaagcggtgctggctgaa
tggcaagaagtattccctgacagtttttatcttgagattcagcgtaccgggcgttccggt
gatgaggcgctggtccatgccagtgttgagctggcagccaaaaccggttgtccgctggtt
gcgaccaacgaggtgatgttcctcaaacaggaggactttgaagcccacgaagcgcgagtg
tgcatcaaccttggacgcacgctggatgatccacagcgaccgcgcaattactccgatcag
cagtatttccgctctgccgaggaaatggccgagctgttcagcgatattcccagtgcgctg
gaaaataccgtcgagatcgcacgtcgatgcaacatcgagatcgagctgggtacttactat
ctgccacgcttcccggtgcctgaagggatgctgatggatgacttcttccgccaggtgtcc
tgggacgggctggaggagcgactcgattttctgctcgataaggctgcccctgattatcag
gagcggcgcaagccctatgaagaacgtctgaagttcgaactggatatcatcatccagatg
ggttttccgggctacttcctgatcgtaatggactttatcaagtgggccaaggaaaacggc
atcccggtaggccctgggcgcggctccggtgccggttcactggtggcctatgtactgaaa
attaccgatctggacccgcttgaatatgacctgctgttcgagcgcttcctgaaccctgaa
cgagtttccatgcctgacttcgatatcgacttctgcatggacaaccgtgacaaggtgatc
gactacgtggcccggacttacggccgcgatgccgtttctcagatcattacttacggtacc
atggctgcgaaggcggtcgtgcgagacgtggcgcgcgttcagggcaagccctttggcctg
gctgaccgcctgtccaagctgatcccgttcgaggtcggcatgactttgagcaaggcctgg
gagcaggaagaggcactgcgtgatttcgtcaatggcagtgaagaagccgaagaaatcatg
gagatggcctacaagctggaagggatcacccgaaatgtcggcaagcacgccggtggtgtg
gtgatcgcgcccacaaaactgacggactttgctgccacctactgcgacgaggaaggtcag
gggttggtgacccagttcgacaagaacgacgtggaagaagccgggctggtgaagttcgac
ttcctcggcctgcgcacactgaccatcatcgactgggcactcgacaccatcaaccgcaag
cgtcaaaaggcgggtgaggagccgttggagatcgagagtatcgatctggaggatccgcct
accttcaaactgctgcagagtgcacagacgaccgcggtgttccagcttgaatccagcggc
atgaaggacctgattcgtcgtcttcagccttcccgctttgaggacatcgtcgcactggtg
gcgctgttccgtccggggccgttgcagtcgggcatggtggacgacttcattaaccgtaag
cacggtcgcgcgcctctggcctggccacaccccgactaccagctcgacagcctgcaaccg
gtgctggaaccgacctacggcatcatcctgtatcaggagcaggtgatgcagattgcccag
gtaatggcgggctatacactgggtggcgcggatatgctgcgtcgagccatgggtaaaaaa
aagcctgaggagatggccaagcagcgtgctgtctttcttgaaggctgtgccaatcagggt
attgataaggacctggcgggcaacatcttcgatctggtagaaaagtttgccggctatggc
ttcaacaagtctcactcggcagcctatgccctggtttcctaccagaccgcctggctgaag
cagcattatccagcggctttcatggccgcagtactgtcctcggatatgcagaacaccgac
aaggtggtgatcttcatcgaagagtgtcgacagatggggctcaaggtgcgtctgccggac
gtcaatgacggtgagtacatgtttaccgtcaacgatgccgatgaagtggtgtatggtctg
ggagcggtcaagggtgtcggtgaaggtcccgtggatgcgatcgttcaggctcgccgtgaa
ggcgggccgttcaaggacctgtttgacttctgtgagcgcgttggtgccggcaaactcaac
aagcgtgtgcttgaggcactggtgcgctgtggtgcgctggacagcctgggaccatcgcgt
gcggttctttgggaggccatcgcctctgcactcaaggccgcagaccagagtgcgcgtaat
gccgatgctggcatcatggacatgtttggtgccgtggaggctgaaagcccatccgacccc
tatgccgagtttggcaaggcacgcgactggaccgacaaggagcgactccagggtgaaaag
gatacgcttggtctctatgtgaccggtcatccgatcgatgagtacgagaccgagcttaag
catctggtcagtcgcaagctggtagagttgcagccgagtcgtggcagcacccagaaaatg
gcgggtctggtcgtggacatgcgacttaaaaagaccaagaaaggcgacaacctttgtttc
ctgaccctcgatgaccgcagtgcccgcatggaagtcaccctgtttggtgacacctatgaa
gaagcccgcaacctgattaataaggatgccgtattggtggtggagggcgaagtcgcccag
gatgactacaatggcggacttaaggtgcgctgcaacaaggtctcgagcatggcgcaggtg
cgcgctcaagcggcccgctgtgtcgagatatgttgtgagcgccgtcagatgaatcagcaa
gggttgcgtcagttggggaatacgctgagacagcatcgtagtccgttgatcagtctggcg
gtggccttgcactatcgccgggaggatgccgaagcgcggctctggcttgacagccagtgg
gcgaccgctccgaccgatgagctgttgctgcagctcaaggagcagtttggcaacgaggcg
gtccggctctgttacgattga
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