Marinobacterium sediminicola: LN244_02670
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Entry
LN244_02670 CDS
T07998
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_02670 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_02670 (rnr)
03016 Transfer RNA biogenesis [BR:
msec03016
]
LN244_02670 (rnr)
Enzymes [BR:
msec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LN244_02670 (rnr)
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN244_02670 (rnr)
Transfer RNA biogenesis [BR:
msec03016
]
Prokaryotic type
tRNA degradation factors
LN244_02670 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ULG69736
LinkDB
All DBs
Position
568633..571107
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AA seq
824 aa
AA seq
DB search
MTKNWQDKDPNAQQEAEKYDQPVPSRDFLLNFLEKWGAPISHPLLCRELGIEDEDGIEGV
RRRLIAMCRDGQLISNRKGEYGLIRKMDLIPGRVIGHRDGFGFLQPDAGGDDLFLSPRNM
REVFDGDRVLVQSIGIDHRGRREGKIVEVLERCTTKLVGRFDGHGGFGSLICENQRITNQ
VMIIPDPTTGLEYEDGQLVVAEIIQHPTRKQPARARVIEVLGDRMAPGMEIKVAIHNYEI
PDEFPDEVHQQIGELTPEVREEDKQNRFDLRDLPFVTIDGEDAKDFDDAVYCEKKTFGGW
RLWVAIADVSYYVRPDSPLDREAVKRGNSVYFPEFVVPMLPELLSNGLCSLNPKVDRLAM
VCEMTVSRAGKLSGYKFYEAVINSKARLTYTKVGAMVDPDHEEHQHWRQEYRDVVPHIEQ
LHALYKSLRKARDERGAIDFETVETRIIFDQVRKIDEIVPVHRNDAHKMIEECMLTANVA
TARFLAKYGKPALYRIHDGPKEAKLENLRAFLGELGLNLPGGDSPEPKDYLKLAEAIEGR
PDRHIIQTMMLRSMQQAVYSPDNHGHFGLAYPAYTHFTSPIRRYPDLLVHRAIRSAIHAE
SKVKGVERPKKFQPSSAFKYDYSLEQMLALGEHCSMTERRADDATRDVVAWLKCEYMQSQ
IGEVYPGVVAAVTGFGVFVELEDLYVEGLIHITALPSDYYHFEAAKQRLVGDRTRRVFKL
GDRLDVQVVRVDLDERKIDFELSGEQAATKPKKLTQRERLAKGQIEDARPARKKGRSRGK
KPEGHHGDAPNRRSAGKEKNAATPKRKKAHKPKHPPRARQKRQG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgactaagaattggcaagataaagaccccaatgcccagcaggaagctgagaaatatgac
cagccggtcccaagccgtgatttcctgctcaattttcttgaaaagtggggggcaccgatc
agccacccgctgctctgccgtgaactcggcatcgaagatgaagacggtatcgaaggtgtt
cgccgtcgcttgatcgccatgtgccgcgatggtcagctgatctcgaaccggaagggcgaa
tatggcctgatccgcaagatggacctgatccccgggcgggtgatcggtcaccgagatggt
tttggcttcctgcagcctgatgccggtggtgatgacctctttctcagtccgcgcaacatg
cgtgaggtgttcgatggtgatcgggtgctggtgcagtcgatcggtatcgatcatcgcggt
cgccgcgaaggcaagatcgtcgaggtccttgaacgctgtaccaccaaactggtgggccgc
tttgatggtcatggtggctttggcagcctgatctgtgaaaaccagcgcatcaccaaccag
gtgatgatcatccctgatccgaccaccgggctggaatacgaagatggtcagctggtggtc
gcggagattatccagcatccgacccgcaagcagccggcccgtgcgcgggtgatcgaagta
ctgggtgatcgcatggcaccgggcatggagatcaaggttgccatccacaactatgaaatt
ccggacgaattcccggacgaggtgcatcagcaaattggcgagctgacgcctgaagtgcga
gaagaggacaaacagaaccgctttgacctgcgtgacctgccctttgtcactatcgacggt
gaagatgccaaggactttgacgatgcggtctattgtgagaagaaaacctttggcggctgg
cgcctctgggtcgcgattgccgatgtctcctactatgtgcgtcccgactcgccgctggat
cgtgaagccgtcaagcgtggcaattcggtgtatttcccggagtttgtggtgccgatgctg
ccggaattgctctccaatggcctttgctcactgaatcccaaggtcgatcgtctggcgatg
gtgtgtgagatgacggtcagtcgagcgggcaagttgtccggttacaagttctacgaggcc
gtgatcaactccaaggcacgactgacctataccaaggtgggcgccatggtggatccagac
catgaggagcaccagcactggcgtcaggaataccgtgatgtcgtgccgcatatcgaacag
ttgcacgcgttgtacaagtcgctgcgcaaggcgcgcgatgagcgtggcgccatcgacttc
gaaaccgtggaaactcgtatcatcttcgatcaggtgcgcaagattgatgagatcgtgccg
gtacaccgcaacgatgctcacaaaatgatcgaggaatgcatgctgactgccaacgtggca
accgcacgtttcctggccaagtatggtaagccggcgctctatcgtatccacgatggtccg
aaggaagccaagctggagaatctgcgtgccttcctcggtgagctgggtctcaatttgcct
ggtggtgacagcccggagccgaaggactatctgaagctggctgaagcaatcgaagggcgg
ccggatcgccacatcatccagaccatgatgcttcgctcgatgcagcaggccgtgtacagt
ccggataatcatggccacttcggccttgcctatccggcctacacccatttcacctctccg
atccggcgttatccggacctgctggttcatcgtgccattcgaagtgccatccacgctgaa
agcaaggtcaagggcgttgagcgtccgaagaaattccagccaagttcggcgttcaagtac
gactacagtcttgagcagatgctggcgctgggtgagcactgctccatgaccgagcggcgt
gccgatgatgccacccgggatgtggtggcctggctcaagtgtgaatacatgcagagtcag
atcggtgaagtctatccgggtgtggttgcagccgtgaccggtttcggggtttttgtcgag
ctggaagatctgtatgtggaaggacttatccacatcactgcgctgcccagtgactactat
cactttgaagccgccaagcagcgcctcgtgggtgatcggactcgtcgtgtcttcaaactc
ggcgaccgtctggatgtgcaggtggtacgggtggatctggacgaacgcaagatcgacttc
gaactctcgggtgaacaggctgcgacaaagcctaaaaagctgacgcagcgagaaaggttg
gcgaagggacagattgaggacgctcgtcccgctcgcaagaaggggcgtagccgcggaaaa
aagcctgaagggcatcatggtgatgccccgaacaggcgctctgcgggaaaggagaaaaat
gccgccacgcccaagcgcaagaaagcgcacaaacccaagcacccgccaagagcaaggcaa
aaacgccagggctag
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