Marinobacterium sediminicola: LN244_03180
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Entry
LN244_03180 CDS
T07998
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_03180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_03180
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN244_03180
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN244_03180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ULG69826
LinkDB
All DBs
Position
674165..675463
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AA seq
432 aa
AA seq
DB search
MTTFADLHLCPELVHTLEELGYKQPTPIQAQAIPRILAGKDLIAEAQTGTGKTAAFALPM
IQQLSREPVTDEYHEIRGLVLVPTRELAVQVGDNALEYGRLLGMRVISIFGGVRFDNQIR
KMKRGADILVATPGRLLDMLNQKKLSLAHLQLLVLDEADRMLDLGFIHDIRKLMSHMPEQ
RQTLLFSATLNSSVEALAESLLRQPERVQVARRNAASQQVKQSAYAVTNADKTDVLSYLI
REGNWQQTLVFTRTKRRADLVAAQLQEEGISTLAIHGDRHQRERLAALQAFKEGEVQVLV
ATDVAARGLDIEALPQVVNYDLPNQPEAYVHRIGRTGRAGQRGWAVSLVAPEERRFLQAI
SALLNKPLQVQPVPRFENGRLIESAPLAEKKTSRPGASKPRSAQKSRTASKETNSPERKP
ARSAGRRSLFSR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacttttgccgatcttcatctctgtccggaacttgtccatacgctggaggagctg
ggctacaagcagcctacgccgattcaggctcaggcgattccgcgcatactggctggcaag
gatctgatcgccgaggcgcagaccggcaccggcaagacggcagcctttgccttgccgatg
attcagcagttgagccgggaaccggtcacggatgagtatcatgagatccgcgggctggtg
ctcgtgccgacccgcgagctggcggttcaggtgggggacaatgcgctggagtacggccga
ctgctgggtatgagagtgatctccatttttggtggtgtacgcttcgacaaccagatccgc
aagatgaaacgtggcgctgatattctggtggcgaccccggggcgtctgctggacatgctc
aatcagaagaaactctcgctggcacacctgcagctgctggtgctggacgaagcagaccgc
atgctggacctggggtttattcacgatatccgcaagctgatgagccatatgccggaacag
cgtcagacgctgcttttttccgccacgctgaatagctcggtagaggctcttgccgaatcg
ctgttgcgacagccggaacgggtgcaggttgcccgtcgcaatgccgccagccagcaggtc
aaacagagtgcctatgcggtgaccaatgccgacaagaccgacgtgctcagttacctgatc
agagagggaaactggcaacagacactggtattcacccgtaccaagcgccgggctgatctg
gtggcggctcagctgcaggaggaaggcatcagtacgttggcgatccatggcgaccgccac
cagcgtgagcggctggcggcgttgcaggcattcaaggagggagaggtgcaggtgctggtg
gcaacggatgtggcggcccgtggtctggatatcgaagcattgccgcaggtggtgaattac
gatctgcccaatcagcccgaggcctatgttcaccgcatcgggcgaaccggccgagccggt
cagcgcggctgggccgtttctttggtggcaccggaagagcggcgttttctgcaggcgatc
tcggcgttgctcaacaaacccttgcaggtgcagcccgtgcctcgctttgaaaatgggcgc
ctgatcgagagtgccccactggctgagaaaaaaacgagcagacccggtgcttcaaagcct
cggtcagcccagaaatccagaactgccagcaaggaaaccaacagccctgagcgtaagcct
gcacgttcggcaggtcgtcgttctctgttttcccgttaa
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