Marinobacterium sediminicola: LN244_05870
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Entry
LN244_05870 CDS
T07998
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_05870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_05870
03009 Ribosome biogenesis [BR:
msec03009
]
LN244_05870
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN244_05870
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN244_05870
Ribosome biogenesis [BR:
msec03009
]
Prokaryotic type
rRNA helicases
LN244_05870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
HEM4
CMS1
UvrA_inter
IPPT
DUF6702
Motif
Other DBs
NCBI-ProteinID:
ULG70340
LinkDB
All DBs
Position
complement(1261490..1263226)
Genome browser
AA seq
578 aa
AA seq
DB search
MSNTDTSPATFGDLGLSTPILNALTEVGYETPSPIQARSIPPLLEGRDLLGMAQTGTGKT
AAFALPLLQRIDTAATHPQLLILAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDS
QIRGLRRGAQVIIGTPGRVMDHIRRGTLQLDRLQALVLDEADEMLRMGFIDDVEWILQHT
PSQRQIALFSATMPQAIRHIAENYLQDPAVIKIQAQTATASTIRQRAWVVRGMSKTQALT
RILEQHEHEAALVFVRTKTATETLAEELNQAGFPAAALHGDIAQVQRERIVSKLKKGELD
VVIATDVVARGLDVERISHVVNYDIPYDTESYIHRIGRTGRAGRQGDAILFVAPREQRLL
KQIERATRQPLETLKLPTAKEINALRAERLQAQILAAAEKAKLDDYMPLISKLQENSELS
AEQLIAATIALMHSDKPLWMDENEPDPNSRPAPRERQERGERGERGERPRRNQRNEPVAV
GMERYWIGVGHLHGVKPGNIVGAIANEAGIESRLIGRINIADDFSCVDLPAGLEPNQLQT
LKRARVCGQRLDIRPWQENGGAPRRPRSKAPVRRQPRD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacactgataccagccccgccacttttggcgatttgggactgtccacccctatt
ctcaatgcactgactgaagttggctacgaaactccctcgccgatccaggcccggagtatc
ccgccgctgcttgaggggcgggatctgcttggcatggcgcaaaccggtaccggcaagacc
gctgcctttgctctgccgctgctgcagcgcatcgacaccgccgccacccatcctcagctg
ctgattcttgctccaacccgtgagctggcactacaggttgcgactgcctgtgagaaatac
tccaaacacctgcctggcctgcgcaccctgtcgatttacggtggccagggctatgacagc
cagatccgtggcctgcgccgtggcgctcaggtgatcatcggcactccgggacgcgtcatg
gatcacatccgtcgcggcacgttgcagctggaccgccttcaggcactggtactggacgaa
gcagatgaaatgctgcgcatgggcttcatcgacgacgtcgagtggatccttcagcatact
cccagccagcgtcagatcgcactgttctctgccaccatgccgcaggcaattcgtcacatc
gccgaaaactacctgcaggacccggcggtcatcaagattcaggcccagactgcgaccgcc
agcacgattcgccagcgtgcctgggttgttcgcggcatgagcaagacccaagcgctgacc
cgcattctggagcagcacgaacatgaggctgcgctggttttcgtccgcaccaagaccgct
accgaaacgctggctgaagagctgaatcaggcaggcttcccggctgcagccctgcatggt
gacatcgctcaggttcaacgtgagcgcatcgtcagcaagctgaagaaaggtgaactggac
gtcgtcatcgcgacggacgtggttgctcgcggtctcgacgttgaacgcatcagccatgtg
gtcaactacgacatcccttacgacacggaatcctatatccaccgcatcggtcgtaccggt
cgtgccggacgccagggtgatgccatcctgttcgtagcgccgcgcgagcagcgcctgctg
aagcagatcgaacgtgccactcgtcagcctctggaaacattgaagctgccgaccgccaag
gaaatcaatgccctgcgtgccgaacgcctgcaggctcagattttggctgcagcggaaaaa
gccaagctggacgactacatgccactgatcagcaagcttcaggaaaattccgagctgagt
gccgaacagctgatcgctgcgaccatcgccctgatgcacagcgacaagccgctgtggatg
gacgaaaacgagcctgaccccaactctcgcccagctccccgcgagcgtcaggagcgcggc
gaacgtggtgagcgcggtgagcgtcctcgccgtaatcagcgtaatgagcccgtagcggtt
ggcatggaacgttactggatcggtgttggccacctgcacggcgtaaaaccgggcaacatc
gtaggtgccattgccaacgaagccggcatagaaagccgtcttatcggacgcatcaacatt
gctgatgacttcagctgtgtcgacctgccagccggacttgaacccaaccagttgcagacg
ctcaagcgcgcccgcgtctgcggtcaacgcctggatatccgcccctggcaggaaaatggc
ggagccccgcgtcgtccgcgtagcaaggcaccggtgcgccgccaaccgcgcgactga
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