Marinobacterium sediminicola: LN244_06295
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Entry
LN244_06295 CDS
T07998
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
msec
Marinobacterium sediminicola
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msec03021
]
LN244_06295 (rapA)
Transcription machinery [BR:
msec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LN244_06295 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Motif
Other DBs
NCBI-ProteinID:
ULG70421
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All DBs
Position
1367135..1369996
Genome browser
AA seq
953 aa
AA seq
DB search
MSQAPFVPGQRWISNSEAELGLGIVVEYANRRVEIRFPAAEETRTYAADNAPLSRVAYEP
GDRICNLLGDEMEVVERFEHNQCFIYSCLDTEGAEVILPEIELDSAVHFSRPQERLFAGQ
LDRNGLFKLRVAALEHQHRLRASAAYGLLGARVQLLPHQFYIAGELSSRMAPRALLADEV
GLGKTIEAGLVLHQRLISGRARRVLIVVPDTLVHQWLVEMLRRFNLMFTLLDEARCAEIE
ASGQDNPFESSQLVICPLSLLTRSEARQVQAEAAGWDILVVDEAHHLGWSQEAPSHAYLC
IEALAQKTPGVLLLTATPEQLGPEGHFARLRLLDPARYPDLQQFLDEEHAYFQLNSLIEP
LLGEQGAGVLRSDTSLQSALAERLGDDVLARWLKLDAAAQPAALDELIRQLIDRQGTGRV
LFRNTRETVTGFPRRQLQKQTLDMPPELALFDEEVAPEAWLHPEKIIGADWIEVDTRVEW
LVNWLKQNRNEKVLVICAHAETAVALEDQLNLREGIRSAVFHEGMSLVNRDRAAAYFAEE
ELGAQVLVCSEIGSEGRNFQFAHHLVLFDLPLTPDLLEQRIGRLDRIGQRNDIQIHVPVY
EGGTAEVLLRWYDEGLDAFGRVCAVGDALYRRFAPKLLECLREPENDEQLEALITETRQA
RENLELDLSRGRDRLLEISSCHPQRAGELLDEVASAESSADLQVFAEKLFDRFGVDIQPH
GPDGLVLHPGDHMLCHLPGLPEEGVTLTFNRERALSREDIQFMSWEHPLLTGTMELISNG
ELGNCTVCTLKLPPLQAGTLLLELVYELRCTAPRYLQLERYLPAGSVRMLVDPEGRDLAA
ALGHEPLNQLLQTVSRATGQKMVRLAREQIVQQLKVADHTIAARLGKLRQQALDKLEQQR
ASEYERLVALAKVNPMIRQEELDAMKDDTEHMVAALQSMELKLDAIRVILVRE
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacaagcgccattcgtacccggacaacgttggatcagtaacagcgaagccgagctc
gggctcggtatcgtcgttgaatatgcaaaccgtcgtgttgagatccgctttccagcggcg
gaagaaacacgcacctatgccgccgataacgcaccgctgagccgggtggcctacgagccg
ggggacaggatctgtaacctgctcggtgacgaaatggaagtggtagaacgcttcgaacac
aaccagtgctttatctacagctgtctggataccgagggcgctgaggttattctgcctgaa
atcgagttggacagtgcagtgcacttcagtcgtccccaggagcggctctttgccggacag
ctggatcgcaacggcctgttcaagttgcgagtggctgccctcgagcatcaacatcgtttg
cgtgcttccgcggcttatggtctgctgggtgcgcgtgtgcaattgctgccacaccagttc
tatattgccggtgaactcagtagccgcatggcacctcgtgccctgttggctgatgaagtg
gggctgggtaagaccattgaggccggtttggtgctgcaccagcgtttgattagcggtcgt
gctcgtcgcgtgctgattgtggtgccggatacgctggtgcaccagtggctggtcgagatg
ctgcgccgtttcaacctgatgtttaccctgctggatgaggctcgttgcgccgaaatcgag
gccagcggtcaggacaatccttttgaaagcagccagttggtaatctgtccactgtcgctg
ctgacccgttccgaagctcgtcaggttcaggcagaagctgccggctgggacattttggtg
gtggatgaggctcaccatctgggctggagtcaggaggcaccaagccatgcctacctgtgc
atcgaggcgctggcgcagaagacgcccggggtactgctgttgactgcgacacctgagcag
ctgggccctgaggggcattttgcccgtttgcgcctattggatcctgcccgctatccggat
ctgcagcagttcctggatgaggagcacgcctatttccagctcaatagtctgattgaaccc
ttgctgggtgagcagggggctggtgtgctgcgaagtgataccagcctgcagtcggcgctg
gctgagcgtctgggtgatgatgttctggctcgctggctgaaactggacgcagcagcgcaa
ccggcagcacttgatgaactgattcgtcagttgatcgaccgccagggtaccggacgcgtt
ttgttccgcaacacccgcgaaaccgtaaccggcttcccgcggcgtcagctgcaaaagcag
acgctggacatgccgccggaactggcgctgtttgacgaggaagtggcacctgaagcctgg
ctgcaccctgaaaagatcatcggtgccgactggatcgaggtggatacccgtgtcgagtgg
ctggtgaactggctgaagcaaaaccgtaacgagaaggttctggtgatctgtgctcacgcc
gagactgcagtggcactggaagaccagctcaatctgcgtgaaggtatccgctcggctgtg
ttccacgagggcatgagcctggtgaaccgtgaccgggctgcggcctattttgccgaggaa
gaactgggtgctcaggtgctggtgtgttccgaaatcggcagtgaagggcgtaatttccag
tttgcccaccatctggtgctgttcgatctgcctctgaccccggatctgctggaacagcgg
atcggtcgtctggatcgtatcggtcagcgcaacgatatccagatccatgtaccggtctac
gaaggcggcactgccgaagtgctgttgcgctggtatgacgaaggactggatgcgttcggc
cgcgtctgcgccgtcggcgatgcgctttaccgccgtttcgcccccaaactgcttgagtgc
ctgcgtgaaccggagaatgacgagcagcttgaggcattgatcaccgagacacgccaggcc
agagaaaacctggagcttgatctgtcccgtggccgtgatcgtctgctggagatcagcagt
tgtcatccgcagcgtgcgggagagttgttggacgaggttgctagtgctgaaagcagcgcg
gaccttcaggtgtttgccgaaaaactgttcgaccgttttggtgtcgatatccagcctcac
ggaccggatggtctggtgttgcacccgggggatcatatgctgtgtcatcttccggggttg
ccggaagagggggtgacactgaccttcaaccgtgagcgtgcgctatcccgcgaggatatc
cagttcatgagctgggagcatcctctgctgaccggtaccatggagctgatcagtaacggt
gaactcggaaactgtactgtttgtaccctgaagcttccaccgctgcaggcgggtactctg
ctgctggaattggtgtacgagttgcgttgtactgcacctcgctacctgcagctcgaacgc
tatctgccggcgggcagcgtacgaatgctggtcgatccagagggtcgtgacttggctgct
gcgcttggacatgaaccgttgaatcagctgctgcaaactgtcagtcgcgcgacgggccag
aaaatggtccgccttgcgcgtgagcagattgtgcagcagctgaaggtcgctgatcacact
attgctgcgcgtcttggcaagctgcgacagcaggcattggataagcttgagcagcagcgt
gcttcagagtacgaacgtttggtggctttggcgaaggtcaacccgatgatccgccaggaa
gaactggacgccatgaaggatgataccgagcacatggtagcggcgctgcagtccatggag
ctgaaactggacgccatcagggttattctggtgcgagaataa
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