Marinobacterium sediminicola: LN244_06945
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Entry
LN244_06945 CDS
T07998
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
msec
Marinobacterium sediminicola
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msec03009
]
LN244_06945 (dbpA)
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LN244_06945 (dbpA)
Ribosome biogenesis [BR:
msec03009
]
Prokaryotic type
rRNA helicases
LN244_06945 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_30
P-loop_SecA
AAA_22
PRAI
Motif
Other DBs
NCBI-ProteinID:
ULG70543
LinkDB
All DBs
Position
1519192..1520568
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AA seq
458 aa
AA seq
DB search
MSQLPFSHLSLKSELLRNLESLEYHYMTPIQQDSLPVIIEGRDLIAQGKTGSGKTAAFGL
GLLQGLDSSRFHVQSLVLCPTRELADQVAQELRRLARQISNVKVLTLCGGMPLGPQIGSL
EHGAHIVVGTPGRIEEHLRKGTLQLNRLQILVLDEADRMLEMGFQDAVDAIVAATPELRQ
TLLFSATYPQSIEAIAARIMREPVKVEVEALHKNTSIEQHFHSVEDEQRDDAVTRLIFHY
RPVSAVVFCNTKQEVRDLEGYLQQSGIAAVALHGDLDQRQRDQTLVRFANQSSSVLVATD
VAARGLDIEGLDLVINHRPSKEAQVHVHRIGRTGRAGQSGVAVTLFNERERFKLAAVEAQ
MDMIITPTALPKGSAATDYRPPMATLQLDVGKKQKIRPGDVLGALTKGGELTGDQVGKIR
VFDFCTYVAVSRPIAREAVSLLSKGKVKGRSCRVRQLR
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcaactgcctttctcgcacctttccctgaagtctgaactgctgcgtaatctggaa
tcccttgagtaccattacatgaccccgatccagcaggacagcctgccggtcattatcgag
gggcgtgacctgattgctcagggtaagaccggctccggcaaaaccgctgctttcgggctc
ggtctattacaggggctcgacagcagtcgttttcacgtacagtcgcttgttctctgcccg
acacgtgagcttgccgaccaggtggcgcaggagttgcgtcgcctggcgcgtcagatctcc
aacgtgaaggtactgacgctatgtggtggtatgccgcttggccctcagattggttccctc
gagcacggcgcgcatattgtcgtcggcacacccgggcgtattgaagagcacctgcgcaag
ggcacccttcaactcaaccgcctgcagatactggttctggatgaagccgatcgaatgctg
gaaatgggcttccaggacgcagttgatgccattgtcgcggcgacaccggagctgcgacag
acgcttctgttcagcgccacctacccgcaatcgatagaagccattgcagcgcgaatcatg
cgtgagccggtgaaagttgaggtcgaggcgctgcacaagaacaccagtatcgaacagcac
ttccattcggttgaggatgagcagcgtgacgatgcggtgacccggttgattttccattat
cgtcccgtttctgccgttgttttctgcaacaccaagcaggaggtacgcgatctggaaggt
tatctgcagcagtctggtattgcggcggtcgcgctgcacggtgatctcgatcagcgtcaa
cgtgaccagacgctggtgcgttttgccaaccaaagttcatcggtacttgttgcgaccgat
gtggcggctcgtggcctggatatcgagggtctggacttggttatcaaccaccgcccctcc
aaggaagcccaggtgcatgtgcatcgtatcggacgtactgggcgtgccggccagagcggt
gtggcggtgacactgttcaacgagcgtgaacgcttcaagttggcggcggtcgaggcgcag
atggacatgatcattacgccgactgccttgcccaagggaagtgctgccactgactatcgg
ccacccatggcgacactacagctggatgtcggtaagaagcaaaagatacgcccgggtgat
gtattgggtgcgctgaccaaggggggcgagttgacaggggatcaggtcggcaagattcgt
gtgtttgatttctgtacctatgtggcggtcagtcggccaatagcacgcgaggccgtgagc
cttctatcaaaagggaaggtcaagggacgcagctgtcgcgtgcgtcagctgcgctga
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