Marinobacterium sediminicola: LN244_07085
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Entry
LN244_07085 CDS
T07998
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LN244_07085 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_07085 (xthA)
Enzymes [BR:
msec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
LN244_07085 (xthA)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LN244_07085 (xthA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
ULG70570
LinkDB
All DBs
Position
complement(1547583..1548398)
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AA seq
271 aa
AA seq
DB search
MKLISFNTNGIRARMHQLECLIDKHQPDVIGIQETKVADDQFPVEQIEALGYHVVYHGQK
THYGVCLISRQPALNVQYGFPGDEADAQRRMIMADFVSSSGQTVRVLNGYFPQGENIDHP
IKFPAKRRFYADLLQHLQSECSPDQPLVVMGDLNISADDKDIGIGEPNRKRWLKTGKTSF
QPEEREWMSHLYEWGLHDSFRRLHPNEDRLFSWFDYRSRGFDDEPKRGLRIDAIMATEVL
LEKCTDAGIDYEIRGMEKPSDHAPIWAEFAL
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgatctcctttaacaccaatggcattcgcgcccgcatgcaccagctggaatgt
ctgatcgataagcatcagcctgatgttattggtattcaggaaacaaaagtggccgatgac
cagtttcccgtcgagcaaatagaggctttgggctatcacgtggtctatcacggacagaaa
acccactacggcgtttgtttgatctccaggcaacctgcgttgaatgtgcagtatggcttc
ccgggtgatgaagccgatgcacagcgacgcatgatcatggcagattttgtcagctcgagc
ggccagacagtgcgtgtacttaacggctatttcccccagggggagaacattgatcacccg
atcaagttccctgccaagcgtcgtttctatgctgatcttttacagcatctgcaatcagaa
tgtagccctgatcagccgctggtcgtcatgggcgaccttaatatctccgcggatgacaag
gatatcgggattggtgaacccaatcgcaaacgctggttgaaaaccggcaagaccagtttt
cagccggaagagcgggagtggatgtcccatttatacgagtggggactgcacgacagcttc
cgccgcctgcacccgaatgaagaccgcttgttcagctggtttgactaccgcagccgtggc
tttgatgacgagccgaagcggggcctgcgtatcgatgcgatcatggcaacagaagtcttg
ctggaaaaatgtactgatgccggtatcgactatgagatcaggggcatggagaagccatcc
gaccacgcccccatctgggccgagtttgcactttaa
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