Marinobacterium sediminicola: LN244_08130
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Entry
LN244_08130 CDS
T07998
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_08130
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LN244_08130
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN244_08130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-ProteinID:
ULG70757
LinkDB
All DBs
Position
complement(1764525..1765829)
Genome browser
AA seq
434 aa
AA seq
DB search
MSFASLGLSAPLLKAVAEQQYTIPSPIQQQAIPAVLSGRDVMAAAQTGTGKTAGFTLPIL
EQLSQGKPAKGNRARVLILTPTRELAAQVAESVATYGKYLSLKSAVVFGGVKINPQMMKL
RGGVDVLVATPGRLLDLYQQNAIRFDSIETFVLDEADRMLDMGFIRDIRKIIQLLPSKRQ
NLMFSATFSDPIRKLAKELIHDPVEVSVTPSNSTAKTVTQFVYPVDKKQKPKLLLKLIED
GNWEQVLVFTKTKHGANRLTRFLDEAGISAAAIHGNKSQGARTKALSGFKNGEVRALVAT
DIAARGLDIDQLPQVVNFELPNVAEDYVHRIGRTGRAGASGQAISLVCLDESDLLGGIER
LTRQTIERRIVEGFEPVHPLPDASAKPGAHSKRRPHHKNHKSARPEHKDGQRTPGTPKPA
RRRPRTQSKAKATV
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctcactggggttatccgctccattgcttaaggctgttgccgagcagcag
tacactataccttcaccgattcagcaacaggcgatccctgcggtattatccggccgcgac
gtcatggccgccgcgcagaccggcaccggaaagaccgccggctttaccttgccgatcctc
gagcagcttagccagggcaagccggcaaaaggtaatcgggctcgcgtgttgatcctgaca
cccacgcgtgaactggccgctcaggtagcggagagcgtagccacctatggcaaatatctc
tccctgaaatcagccgttgtcttcggtggagtgaagattaatcctcagatgatgaagctt
agaggcggcgtggatgtgcttgtcgcaacccctggtcgtctgctcgacttatatcagcaa
aatgccattcgattcgacagcattgaaacgttcgtgctggacgaggctgatcgcatgctt
gatatggggtttattcgtgatattcgaaagatcattcagttattgccgtcgaaacgtcaa
aacttgatgttttcggcaacattctcggatccaattcgtaaactcgccaaggagttgatc
cacgatcctgtggaagtctctgttactcctagcaacagtaccgccaagactgttacccag
ttcgtttatccggtcgataagaagcaaaagccaaaattgctgttgaagttgatcgaagat
ggaaactgggagcaggtgcttgtcttcaccaaaaccaagcatggcgccaatcgcctgact
cgctttctggatgaggcggggattagtgccgcagccatccatggaaataaaagccaggga
gctcgcaccaaggcgttgtcaggcttcaagaatggtgaggtgcgagcgcttgttgccact
gatattgcggctcgagggctggatattgaccagctgccgcaggttgtcaactttgagctg
cccaatgtagcggaagattacgttcatcgtataggccgtacggggcgagcgggcgccagt
ggtcaggccatatcgcttgtttgcctggatgaaagcgacctgctgggtgggattgagcgc
ctcacacgacaaaccatcgagcggcgaattgtagaaggcttcgagcctgttcatccgctg
ccggatgcatcagcaaagcctggtgcgcacagcaagcgcaggcctcatcataaaaatcat
aaatccgcacgaccagagcataaagatgggcagcgtactcctggtacgccaaagccggcg
cggcgccgcccacgtactcaaagcaaggcaaaggcaaccgtctga
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