Marinobacterium sediminicola: LN244_08880
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Entry
LN244_08880 CDS
T07998
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_08880 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_08880 (rne)
03009 Ribosome biogenesis [BR:
msec03009
]
LN244_08880 (rne)
Enzymes [BR:
msec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LN244_08880 (rne)
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LN244_08880 (rne)
Ribosome biogenesis [BR:
msec03009
]
Prokaryotic type
rRNA processing factors
LN244_08880 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ULG67836
LinkDB
All DBs
Position
1914045..1917173
Genome browser
AA seq
1042 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESDSREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFCKQPERGQRPNIKEMVKEGTEVIVQVDKEERGNKGAALTTFISLA
GRYLVLMPNNPRAGGISRRIEGDDRAQLKEALSGVNIPDGMGAIVRTAGIGRSSEELQWD
LDYLITLWEAVQAVNERPAPFLVYQESNVVIRAVRDYLRADIGEVLIDNPSVYEQALMFV
QQVMPSYENRIKLYKEQTPLFNRFQIESQIETAFEREVKLPSGGSIVIDPTEALVSIDIN
SARATRGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREVENRLRD
SLKLDRARVQMGRISRFGLLEMSRQRLRPSLAESRGSVCPRCHGQGTIRDTESLALSILR
LIEEESSKDRTAQIRAILPVSVATYLLNEKRHEVHGIEMRHQVRVVIVPNPNMETPHYEV
VRLREDHTVTTTQDPSYNLQPESEPVSQETSRTPVVKREQAAVKAVVPPTRAPQPAVDEA
EAQKAPKAEKAQAQKPSVSSEAQPSNTQTLSFGERILGVLRNIFGGGKTEAEKPAKDSKK
SAPRDSNDTQESSAQNKSDRREGRSGDSRSGRDRRARNRRDGDRRRGGRDKRDSDEIITV
ERDQNLPAIGENESSERNGEKKEGRRRRRRSRRDDTQAQEASTSDIAVNEVQQGAKADKS
DNNDDSSRASRRRGRRRRNTDERTSTRTPLPDDMRDAKAEEEIQALLGEQKITNENLSPE
ASSTQEQVSVINETEEQQPQQQAEEHSAEVEVAAEAKSEAVTSTLNDETDSTAKSDATET
VTTDASGSDEVNTDENTESKAEAEESEKPKRGSRGRRRSPRSRGKSENQVSGDQTAPEGE
SEPASAAEETQQEELPLETAGTAVPESDESSLPENAVTHQESETPDVTTVQSETEHSLVS
DVQSEQSAEEIADTEAPVTPETSSQPTESQATETEAEDKETTPVASSTDEQPRRRRAGRA
PNDPREVRRRQQAQTEKSDSDQ
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcaactcagcctgaagagttgcgcgttgcgctggttgatggccaacgt
ctcttcgatctcgatatcgaatccgacagccgcgaacagaaaaaggcaaacatctacaag
ggccgcattacacgcgtcgagcctagccttgaagctgcctttgtcgacttcggcgctgaa
cgtcatggcttcctgccactaaaagaaatctcccgagaatacttctgcaaacagcctgaa
cgcggccagcgtccgaacatcaaggaaatggtcaaggaaggcacagaagtcatcgttcag
gtcgacaaggaagagcgtggtaacaagggtgcagccctgaccactttcatcagccttgcc
ggtcgctacctggttctgatgcccaataacccgcgtgctggcggcatctctcgacgcatc
gaaggtgatgatcgcgcccaactcaaagaagcgctgtccggagtcaatatccccgatggc
atgggcgctattgttcgcacagccggtattggccgcagctcggaagagctgcagtgggat
ctggactacctgatcactctgtgggaggccgttcaggcagttaacgaacgccctgcgcct
ttcctggtttaccaggagagcaatgtcgttatccgtgccgttcgtgattatctgcgcgct
gatatcggcgaggttctgattgacaaccccagcgtctacgaacaggccctgatgttcgta
cagcaggtgatgcccagctacgaaaaccgcatcaagctttacaaggaacagactccgctg
ttcaaccgattccagattgagagtcagatcgagacggcgttcgagcgtgaggtcaaactt
ccttccggcggctccattgtcattgatccgaccgaagcactggtctccatcgatatcaac
tcggcacgcgcgacacgtggcggcgacatcgaagaaactgctttgcagaccaacctggag
gcggctgaagagattgcacgccagcttcgcttgcgtgatattggcggcctgatcgtgatc
gactttatcgacatgacgccgatcaagaaccagcgcgaggtcgaaaatcgtctccgtgac
tccttgaaactggatcgcgcccgcgttcagatgggtcgcatttcacgctttggcctgctt
gagatgtctcgccagcgcctgcgcccctctctggccgaatctcgtggcagtgtctgccca
cgctgccacggccaaggcactatccgtgataccgaatcacttgcactgtcgatccttcgc
ctcattgaggaggagtcttccaaggatcgcactgcccaaattcgtgccatcctcccggtt
tctgtggcgacgtacctgctcaatgagaagcgtcatgaagtacatggaatcgagatgcgc
catcaggttcgagtcgtcatcgtgccgaacccgaacatggaaacaccgcactacgaggtc
gtacgcctgcgtgaagatcatacggtaaccaccactcaggatccgagctacaacctgcag
cctgaatccgagccggtttcacaggagaccagccgcacgccggtagtcaaacgagaacag
gccgccgtcaaggccgtcgtcccgcccacgcgcgcgccccaacccgctgtggatgaggcc
gaggcgcagaaagcacctaaagcggaaaaagcacaggctcaaaagccatccgtatccagt
gaagcacaaccctcgaatacacagacactatcttttggtgaacgtattcttggcgtgctg
cgcaacatcttcggcggcggcaagaccgaagccgagaagcctgccaaggacagcaagaaa
tccgcgccccgtgacagcaacgatactcaggaatcgtctgcccagaacaagtccgaccga
cgtgaaggtcgtagcggcgattccagaagtggccgtgatcgccgcgcccgcaaccgtcgc
gatggcgatcgccgtcgcggtggtcgagataagcgcgacagtgatgaaatcatcaccgta
gagcgcgaccagaatcttccggctatcggagaaaatgaatcctctgaaagaaatggcgag
aagaaagagggtcgtcgccgccgtcgtcgcagccgccgtgatgacacacaggctcaggaa
gcaagcaccagtgacatcgctgtcaatgaagtgcagcaaggtgcaaaagcggataagtcc
gataacaacgacgatagcagccgtgcttcacgtcgtcgtggccgtcgccgccgcaatact
gatgaacgcacatcaactcgcactccgctgcctgatgacatgcgtgacgccaaagccgaa
gaagagattcaggcactgctgggtgaacagaaaatcaccaatgaaaacctgagccctgag
gcctcttcaacccaagaacaggtttctgtaatcaatgaaaccgaggaacagcagccacaa
cagcaggccgaagagcactctgctgaagttgaggttgcagctgaggctaaaagtgaagca
gttaccagcacgctgaatgatgagaccgacagcacggccaagtctgatgcaactgaaacg
gtaacaacagatgcttctggcagtgatgaggtcaatactgacgaaaacactgagtccaaa
gcagaagctgaggaatccgaaaagcccaaacgcggctcacgcggtcgtcgccgctctccg
cgctcgcgcggcaagtccgaaaatcaggtatccggtgatcaaaccgcacctgagggcgag
tcagaaccggcgtctgcagcagaggagacgcaacaggaggagttgccacttgaaacagca
gggactgcggtgcctgagtccgatgaaagcagccttccggagaatgctgttactcatcaa
gagtcagagactcctgacgtaacaactgttcagagcgagactgagcattctctggtctct
gatgtacaaagcgagcaatcagctgaagagatcgctgatactgaggcacctgtaacccct
gagacttcatctcagccgaccgaatcccaggcgaccgagaccgaagctgaagacaaggaa
acaacgcctgtagcatcatcaaccgatgaacagcctcgccgtcgtcgtgctgggcgcgca
ccaaatgatcctcgcgaagtgcgtcgccgccagcaggctcagactgagaaaagcgatagc
gatcagtaa
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