Marinobacterium sediminicola: LN244_09120
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Entry
LN244_09120 CDS
T07998
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
msec
Marinobacterium sediminicola
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msec03009
]
LN244_09120 (rlmD)
Enzymes [BR:
msec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LN244_09120 (rlmD)
Ribosome biogenesis [BR:
msec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LN244_09120 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_12
Methyltransf_15
RrnaAD
Methyltransf_23
UPF0020
PCMT
TRM5-TYW2_MTfase
Ubie_methyltran
Methyltransf_32
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ULG67882
LinkDB
All DBs
Position
1964865..1966220
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AA seq
451 aa
AA seq
DB search
MSRKNRIQFGAPSRVRKSPSLPQAPLTLNIERLSHEGRGIARVDGKTIFVAGGLPGETLT
ARITAQHKRYNEAELVEIQTASPDRSPAFCPHFQQCGGCDLQHLNIDQQRAHKQQQVLDQ
LARFASVIPEQIEEPILGPDRGYRRAARIGINQRQRDGELLVGFRRRGSNKLLNIDTCPV
LDVRLQPVFATLREHLKDLNDIRSLTHVDVSCGDDDGFIRFRCTRRPNETLMSRLKAVSQ
QLQLKLVIGLNDGDMPIDEGLAHYTLPEADIELGFSSTDFIQVNAGVNKAMINQAIAWLA
PQPDQRVLDLFCGLGNFTLPLARKAAQIVGVEGSAEMVGRARQNAANAGIQNAEFYRADL
SESFRHATWFREGFDLILLDPPRTGAREAVQQLSHYGAAKVLYISCNPSALVADLPLLTA
AGYRVTRFGIMDMFPHTAHVESMLLLERTDA
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtaaaaacagaatacagttcggtgcgccgtcacgcgtgcgcaaatctccttca
ctgccccaggcgcctctaacattaaacatagagcgcttgagccatgaaggacggggtatc
gccagagttgacggcaagacaatatttgtcgccggaggccttcctggtgaaacgcttacc
gcgcgaattaccgctcaacacaagcggtataacgaggccgaactggttgaaattcagacc
gccagccctgaccgttcaccagcattctgcccacattttcagcagtgtggcggctgtgat
cttcaacacctgaacattgaccagcagcgtgcgcacaagcaacaacaggtacttgatcag
ctggcacgttttgcctctgtaattcccgaacagatcgaagaaccgatccttggcccggac
aggggttatcgtcgtgcagcccgcattggtatcaaccagcgtcagcgtgacggtgaacta
ctggttggcttccgccgacgcggcagcaacaaacttctgaatattgatacctgcccggtt
ctcgacgtacgactgcaaccggtttttgctacgcttcgggaacatcttaaagacctgaat
gacatccgcagcctgactcatgtcgatgtcagttgcggtgacgatgatggctttatccgg
ttccgctgcacacgcagacccaatgaaacacttatgagccggctcaaagcggttagtcag
caactgcaactgaagcttgtcatcggattaaatgatggtgacatgccgatcgatgaaggt
cttgcccattacaccctgccggaagctgatattgaattgggcttttccagtacggacttc
attcaggtcaatgcgggtgtcaacaaggccatgatcaatcaggccattgcctggctggca
cctcagcctgaccagcgtgtgctcgacctgttttgcggtcttggcaactttaccctgccc
ttggcccgcaaggcggctcagattgttggcgtcgaaggatctgccgagatggttggtcgt
gctcgccagaatgctgctaacgccgggattcagaatgcggagttttatcgtgctgacctt
agcgaaagcttccgtcatgcaacatggttccgtgaagggttcgatttgattctgctggat
ccaccgcgcacgggcgcacgagaagccgttcaacagctctcacattatggcgccgcgaag
gttctgtatatctcatgtaacccgtccgcgctggtggcagacctgccgctactgacagcg
gccgggtacagggttacccgtttcggcatcatggacatgttcccccacaccgcacacgtt
gaatccatgctactgcttgagcgaacagatgcctga
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