Marinobacterium sediminicola: LN244_10480
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Entry
LN244_10480 CDS
T07998
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LN244_10480 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msec03019
]
LN244_10480 (recQ)
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_10480 (recQ)
Enzymes [BR:
msec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LN244_10480 (recQ)
Messenger RNA biogenesis [BR:
msec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LN244_10480 (recQ)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LN244_10480 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
HTH_40
ResIII
HTH_7
VMAP-M0
Motif
Other DBs
NCBI-ProteinID:
ULG68134
LinkDB
All DBs
Position
complement(2269158..2271290)
Genome browser
AA seq
710 aa
AA seq
DB search
MIERARQILADVFGFESFRHPQDEVVATLIEGRDALVIMPTGGGKSLCYQLPALVREGCG
IVVSPLIALMQDQVSALSQLGIRAGCLNSSMTLEALQETEQLLRKGELDLLYVAPERLQQ
PRTQQLLNQCTLALFAIDEAHCVSQWGHDFRPEYMQLNQLRHLFPGVPRIALTATADART
RQEILDRLELIDARAFVCGFDRPNIRYRIGQKNRAREQLLRFIREEHPQDVGVVYCLSRK
RVEETAAWLCERGFNALPYHAGLDAHLRQHHQHRFLTEEPVIMVATIAFGMGIDKPNVRF
VAHLDLPRSIEAYYQETGRAGRDGLPADAWMVYGLQDVIFLRQMLEGSGAEDAQKQIERQ
KLEAMLGLCEITSCRRQALLEYFGETEHQPCGNCDTCLEPVPIWDGTESARKALSAVYRS
GQQYGVNYIIDILRGESSDKTRQRGHEQLSVWGIGKALDQQQWRSVFRQLVARGYLNVDP
QGFGVLHLSEKCRPLLKGEETLELRRDLRQQAPSAGSGKGRSAASQQRLDADESRLWDAL
RALRKQLAQEQDVPPYVIFHDATLMEMVLYRPLSAEQLRRLSGVGERKLALYGQPFLDLI
AEHAEGADSGSDQAEQSLLLYRSGMTVEQVARQQKLSPNVIYGHLAQGIRQGMISVEEVV
ELPASERVEIENTIRFCRQQFGDSLKSVHEALEGRYEYGLLRCIRQGMDM
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacgcgcccgacaaatactcgccgatgtattcggcttcgagtccttccgtcac
ccccaggatgaggttgtggccaccctgattgaagggcgtgatgcgttggtgatcatgccg
accggtggcggcaagtcgctctgctaccaactgcccgctttggtccgcgaaggctgtggc
attgtggtgtcgccgcttatcgctctgatgcaggatcaggtcagtgccctgtctcagttg
gggatcagggccggttgtctgaactcctcgatgacgctggaagccctgcaggaaactgaa
cagctgctgcgaaagggcgagctggacctgctttatgtcgccccggagcggctgcaacag
cctcgtacccagcaactgctcaaccagtgcacgctggctctgtttgcgattgatgaagcg
cactgcgtatcccagtgggggcatgacttccggccggaatacatgcagttgaaccagctg
cgacacctgtttcccggagtgccgcgcattgcattgacggccaccgccgatgctcgtacc
cggcaggagattctggaccggttggagcttatcgatgcccgtgctttcgtttgcggcttt
gatcgtcccaacattcgttatcgcattggtcagaaaaaccgtgctcgtgaacagttgctc
cggtttatccgtgaggagcatccgcaggatgtgggcgtggtttactgtctatcgcgcaaa
cgggttgaagagacagcggcctggctctgcgagcgtggctttaacgccttgccttatcac
gccggcctcgatgctcatttgcgacaacaccatcagcaccgcttcctgactgaagagccg
gtgatcatggtcgcaaccatcgccttcggcatggggatcgataagcccaatgtgcgattt
gtcgcccacctcgacctgccacgctctatcgaagcctattatcaggaaaccggtcgcgcg
gggcgtgatggtcttccggcggatgcgtggatggtgtatggcctgcaagatgtgattttc
ctgcgccagatgctggaaggttcgggcgcagaggacgcacagaagcagatagagcgacaa
aagctggaagcgatgctggggctgtgcgaaatcaccagttgccgtcgccaggcactgctg
gagtactttggcgagacggagcatcagccctgcggtaactgtgatacctgtctggaacct
gtgccgatatgggatggcaccgagtcagcccgaaaggccctgtcggcggtgtaccgcagc
ggtcagcagtatggtgtcaactacatcatcgatatcctgcgcggagagtccagcgacaag
acacgccagcgtggacatgagcagctgtcagtatggggcatcggtaaggcgctggatcag
caacagtggcgttcggtgttccgccagctggtggctcgcggttacctgaacgttgatcct
cagggatttggtgtgctgcacctgagtgaaaagtgccgtccgctgctgaagggggaggaa
acccttgagttacgtcgtgatctgcgtcagcaggcgccgtcagccggcagcggcaaggga
cgcagtgccgcgtcacagcagcggctcgatgctgatgagtcccgtctttgggatgcgttg
cgagcgctgcgcaagcaactggcgcaggagcaggatgtcccgccttatgtcatctttcat
gatgctacgctgatggagatggtgctttaccggccgctgagtgccgaacagctgcgccgt
ctcagtggagtcggagaacgcaaactggccttgtacggtcaacccttcctggatctgatc
gcggaacatgccgagggggctgacagtggcagcgatcaggcggaacagtcgctgctcctg
taccgcagtggcatgacggtagagcaggttgcacgtcagcagaaactgtctcccaacgtt
atatacggccaccttgcccagggaatccgccaggggatgatctcggttgaagaagtggtt
gagctgcctgccagtgagcgtgtcgaaatcgagaacaccatccgtttctgtcgtcagcag
tttggagattccctgaagtcggttcacgaagcgctggaaggtcgttatgagtacggcctg
ttacgttgcatccgtcagggaatggacatgtga
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