Marinobacterium sediminicola: LN244_13380
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Entry
LN244_13380 CDS
T07998
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
msec
Marinobacterium sediminicola
Pathway
msec02020
Two-component system
msec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LN244_13380
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LN244_13380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msec03021
]
LN244_13380
Transcription machinery [BR:
msec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LN244_13380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
UPF0561
DUF3164
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
ULG68677
LinkDB
All DBs
Position
2933195..2934706
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AA seq
503 aa
AA seq
DB search
MKQSLQLKIGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVDEEQDNAETDT
EKQDSSSDQERVRDTEHTTATEEQDSWDDSSSEEGWNEQIPVELATDSQWDDTFQHQSSP
GPERDSDWDPGDNDSTEEDLQDHLLWQLNLTPMSDNDRMVALALIDAVDADGYLRTSIEE
VLEHFQQSEPQLFADSEIDEIEAVLHRVQQFDPAGVCARDLSECLLLQLRQLPESTPLLG
DAMRLVRDHLNLLGSHDYRTLMRRLRLKEESLQQVIGLIQTLNPKPGTLISSEPPEYVIP
DVIVRKIQGQWNVSLNAEASPRLKINTQYADLIRRADNSADNTYLKNHLQEARWFLKSLL
SRNETLLKVATEIVARQIDFFEEGEEGMKPMVLHDIAEAVDMHESTISRVTTQKYMHTPR
GIFELKYFFSSHVSTSDGGAASSTAIRALIKKLVSNENTAKPLSDNKIAQLLKEQGINVA
RRTVAKYREAMNIPPSNERKRLV
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtcgttacaactcaagatcggtcagcagctgacaatgaccccccaactgcag
caggcaattcgtttgctgcagctctccactctggacttgcaacaggaaattcaggaagca
ctggacagcaaccccctgctggaagtggacgaggagcaggacaacgccgagaccgacacc
gagaaacaagactccagctcagatcaggaacgtgttcgcgataccgagcacaccactgca
accgaagagcaggacagctgggatgacagcagcagcgaagagggctggaatgaacagatt
ccggtcgagctggcaactgacagccaatgggacgatacctttcagcaccagagctcacct
ggcccggaacgcgacagcgactgggatccgggtgacaacgacagcaccgaggaagacctt
caggatcacctgctgtggcagctcaacctgacaccaatgagtgacaatgatcgcatggtc
gccctcgcgctgattgatgccgttgatgccgatggctacctgcgaaccagcatcgaagaa
gtgttggagcatttccaacaaagtgagccccaactcttcgccgacagcgaaattgacgag
atcgaagcggtactgcaccgggtccagcagtttgatcctgccggcgtctgcgcccgtgac
ctcagcgagtgcctgctgctacagctgcgccaattgccggaaagcacccccttactcggt
gatgccatgcgcctggtgcgtgatcacctcaaccttctgggcagccatgactaccgcacc
ctgatgcgccgcctgcgcctcaaggaagaaagtctacagcaggtgataggcctgattcag
accctgaatcccaaacccggcacgctgatcagttctgagccacccgaatacgttatcccc
gatgtcatcgtgcgcaagatacaggggcagtggaacgtcagtcttaacgctgaagcgtca
ccaagactgaaaatcaacacccaatatgccgacctgattcggcgtgcggacaacagtgcc
gacaacacctacctgaagaatcacctgcaggaagcacgctggtttctgaaaagcctgctg
agccgcaacgaaaccctgctcaaggtcgccaccgagatcgttgctcgccagatcgatttc
tttgaggagggcgaagaaggcatgaagcccatggtactgcacgacatcgccgaggcggtc
gacatgcatgaatccactatttccagggtgacgacgcaaaagtacatgcacacccctcgg
ggcattttcgaactcaagtacttcttctccagtcatgtcagcacctcagacggaggcgca
gcctcgtcaaccgcaatccgggcattgatcaagaaactggtcagtaacgaaaatacagcc
aaaccactcagtgacaataagatcgctcagctgttaaaagagcagggaatcaacgtcgcc
agacgcaccgttgcaaaatatcgtgaggcgatgaacattccaccttctaatgagcgcaag
cgtctggtttaa
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integrated database retrieval system
