Marinobacterium sediminicola: LN244_15315
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Entry
LN244_15315 CDS
T07998
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LN244_15315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msec03021
]
LN244_15315 (rpoC)
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_15315 (rpoC)
Enzymes [BR:
msec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LN244_15315 (rpoC)
Transcription machinery [BR:
msec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LN244_15315 (rpoC)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LN244_15315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ULG69036
LinkDB
All DBs
Position
complement(3339403..3343629)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLLKSQGQSEEFDSIRVSLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTTLERGQMLNDEQYFEALEEFGDEFDARM
GAEAVKELLASIDLEEECQQLREELPQTNSETKIKKLSKRLKLLEAFLKSGNNPAWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLELRGHATTIKAAKKMVEREEPLVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERVAAKGEGMVFSDIKEVQRAHGAG
QVHLQARIKVRIREVIRDIEGNVEERYGLQDTTVGRAMLFDIVPAGLPFSLVNQTMKKKA
ISKLLNEAYRRCGLKDTVIFADQLMYTGFRQATMSGSSIGVNDFEIPAEKVEIIAEADAE
VKEIERQFADGLVTQGEKYNKVIDIWSRANELLAKKMMDNLKVDIVTDAEGNQIEQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEEDCGTDRGVIVQPMIEGGDVIVTLGERVL
GRVVAEDVLNPAETETLIPAGTLIDEAWVHRLENDEAYSGIDEIVVRSAITCESQHGICS
NCYGRDLGRGHLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSIQVKNGG
EIRLHNLKFVERTDGNLVATSRSGELGVTDEHGRERERYKLPYGAIIKVRDGSKVDAGAV
VANWDPHTHPIVTEVAGKVEFVGMEDGITIKRQTDELTGLSTIEILDAKDRPQAGKDIRP
MIKLVDANGNDVYHPGTEMPAQYLLPAKAIVNLNDGAEVQIGDILARIPQEGSVNKDITG
GLPRVADLFEARKPKESAVLAEVSGSVTFGKETKGKRRIVITPNDGSDPVETMIQKWRNL
NVFEGETVEKGEVLSDGPSNAHDILRILGVKELAKYIVSEIQEVYRLQGVAINDKHIEVI
VRQMLRKAEIVDAGDSDFIPGDQVEYAAIVEENKRLEAEGKITCKYERVLLGITKASLAT
ESFISAASFQETTRVLTEGAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRKRQMA
TEGVTVSAEEVQQALTEALNASMSPDAE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatctgctgaagtcccagggacagtccgaagagttcgactccatt
cgcgtatccctggcatcaccggacatgatccgttcctggtcctacggtgaagttaaaaag
ccggaaactatcaactaccgtaccttcaaaccggagcgtgacggcctgttctgcgccaag
atcttcggcccggtgaaggactacgagtgtctgtgcggcaagtacaagcgcatgaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggtcacattgagctggcctctccggttgctcatatctggttcctcaagtcactg
ccgtcccgtatcggtctgatgctggatatgaccctgcgtgacatcgagcgtgtgctttac
tttgagtcctttgtcgtaatcgaaccaggcatgaccacgctggagcgtggacaaatgctg
aacgacgagcagtactttgaagcgctggaagagtttggcgacgaattcgatgcgcgcatg
ggtgccgaggcggtcaaggaactgctggcttccatcgatcttgaagaagagtgtcagcaa
ctgcgtgaagagctgccgcagaccaactccgaaaccaagatcaagaaactgtccaagcgt
ttgaagctgctcgaagctttcctgaagtccggcaacaatcctgcctggatgatcatggaa
gtgctgccggttctgccgccggacctgcgtccgctggtaccgctggatggtggccgattc
gcgacctccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgactgctggacctgaatgcaccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtccgtcgatgcactgctggataacggccgtcgcggtcgtgccattaccggatccaac
aagcgtccgctgaaatccctggccgatatgatcaagggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgtggattactccggccgttccgtaatcgtggtcggtccttac
ctgcgcctgcaccagtgtggtctgccgaagaaaatggcattggaactgttcaagccgttc
atcttctccaagctggaattgcgtggtcacgcgaccactatcaaggccgccaagaagatg
gtcgagcgcgaagagccgctggtttgggatatcctcgatgaagtgattcgtgagcacccg
gttctgttgaaccgtgcgccgacactgcaccgtctgggtatccaggcgttcgaaccggtc
ctgatcgaaggtaaggcgattcagctgcacccgctggtctgtgcggcttacaacgccgac
tttgacggtgaccagatggcagtacacgtgccgctgacactggaagcccagctcgaagcc
cgtgcgctgatgatgtcgaccaacaatatcctgtcaccggcgaacggcgagccgatcatc
gtgccgtctcaggacgtggtactgggtctgtactacatgacccgtgagcgtgtcgctgcc
aagggcgaaggcatggtcttctctgacatcaaggaagtccagcgtgcccacggcgccggt
caggtgcatctgcaggcgcgtatcaaggtccgtatccgtgaagttatccgtgatatcgaa
ggcaacgtagaagagcgctatggcttgcaggacaccactgtcggtcgtgccatgctgttc
gatattgttccggcgggactgccgttctctctggtcaaccagaccatgaagaagaaggcg
atctccaagctgttgaacgaagcctatcgccgctgtggtctgaaagatacggttatcttt
gctgaccagctgatgtacaccggtttccgtcaggcaaccatgtccggttcttctatcggc
gtaaacgacttcgaaattccggccgagaaggttgaaatcatcgccgaagcggatgccgaa
gttaaagagatcgagcgtcagttcgctgacggtctggtaactcagggcgagaaatacaac
aaggttatcgacatctggtcacgtgccaacgagctgctggccaagaagatgatggataac
ctgaaagtggatatcgtgaccgatgctgaaggcaatcagatagagcaggagtcgttcaac
tccgtctacatgatggccgactccggtgcgcgtggtagcgccgctcagattcgtcagctg
gccggtatgcgaggcctgatggcgaagccggacggctccatcatcgagacaccgatcgta
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aagggtcttgcagatactgcattgaagaccgctaactccggttacctgacccgtcgtctg
gttgacgtggctcaggacgtggtgattacggaagaagattgcggtaccgatcgtggcgtt
atcgtacagccgatgatcgagggtggtgatgtgatcgtgaccctgggtgagcgagtactg
ggccgtgttgtggccgaggacgtgctgaacccggccgagaccgaaacgctgatcccggca
ggtaccctgatcgatgaagcctgggtgcatcgtctggaaaatgatgaagcctacagcggt
attgatgagatcgtggttcgctctgcaatcacctgtgaatctcagcacggtatttgctcc
aactgttatggtcgcgacctgggtcgtgggcatctggtcaaccgtggtgaagctgtcggt
gtaatcgccgctcagtcaatcggtgagccgggtacacagctgaccatgcgtacgttccac
atcggtggtgcggcttctcgagcggctgcggttgacagcattcaggtgaagaacggtggc
gagattcgtctgcataacctgaagtttgtagagcgtaccgatggtaacctggtggccact
tcccgttccggtgagctgggcgtcaccgatgagcacggccgtgagcgcgagcgctacaag
ctcccatacggtgccatcatcaaggtacgtgacggctccaaggtcgatgccggtgctgtt
gtcgccaactgggacccgcatactcacccgatcgtcactgaagtggcgggtaaggtcgag
ttcgtcggcatggaagacggtattaccatcaagcgtcagacggatgagctgaccggtctg
tccacgatcgaaattctcgatgcgaaggatcgtccgcaggctggcaaggacatccgtccg
atgatcaagctggtcgatgccaatggtaacgacgtgtaccacccgggtaccgaaatgccg
gcgcagtacctgctgccagctaaagcgatcgtcaacctgaatgatggtgcggaagtacag
atcggtgacatcctggcgcgtattccgcaggaaggctcggtcaacaaggacattaccggt
ggtctgccacgagttgccgacctgttcgaagcgcgtaagccgaaagagtctgccgtactg
gcagaagtgtccggtagcgtaaccttcggcaaggaaaccaagggcaagcgtcgcatcgtg
attacgccgaatgacggcagtgatccggttgagaccatgatccaaaaatggcgaaacctg
aacgtattcgaaggtgaaaccgttgagaagggtgaagtgctgtctgacggtccgtcgaac
gcacatgacatccttcgaattctgggtgttaaagaactggccaagtacatcgtcagcgaa
attcaggaggtttatcgcctccagggtgttgcgatcaacgataagcatatcgaagtaatc
gtgcgccagatgttgcgcaaggctgaaatcgttgatgccggtgactctgacttcattccg
ggtgaccaggttgaatacgcggctatcgttgaagagaacaagcgtctggaagccgaaggc
aagattacctgtaagtacgagcgtgtactgctgggtatcaccaaggcatctctggcaacc
gaatccttcatctctgcggcgtcgttccaggaaacgactcgcgtactgaccgaaggtgcg
gtaaccggcaagcgcgacttcctgcgtggcctgaaagaaaacgttgttgtgggtcgtctg
attccggcaggtaccggtttggcgtaccacagcgaacgcaagcgtaaacgtcaaatggca
acagagggcgtcactgtaagtgcagaagaagtgcagcaggcactgacggaagcactgaac
gcctccatgtcgccagacgctgagtaa
DBGET
integrated database retrieval system
