Marinobacterium sediminicola: LN244_15320
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Entry
LN244_15320 CDS
T07998
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msec
Marinobacterium sediminicola
Pathway
msec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LN244_15320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msec03021
]
LN244_15320 (rpoB)
03400 DNA repair and recombination proteins [BR:
msec03400
]
LN244_15320 (rpoB)
Enzymes [BR:
msec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LN244_15320 (rpoB)
Transcription machinery [BR:
msec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LN244_15320 (rpoB)
DNA repair and recombination proteins [BR:
msec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LN244_15320 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
ULG69037
LinkDB
All DBs
Position
complement(3343707..3347807)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKNFAKLRQVMDVPYLLAIQLDSYRRFLQDGSAGEGRRDEGLHAAFNSV
FPIVSYSGNAALEYAGYRLGEPVFDVKECQQRGITYAAPLRVKVRLVIYDRDSSTKAVKD
IKEQEVYMGEMPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGYEAEEILETFFDTTGWTLEDDS
IWMDLIPERLRGETMSFEIKDPEGNVIVEAGRRITPRHIRQMAKAGMQQLNVPAEYLIGK
ALARNLVDPTTGELIANCNAEITEELIGKMQVLGIDRIETLYTNDLDCGSFISDTLRIDP
TRNQLEALVEIYRMMRPGEPPTKESAEGLFENLFFSDERYDLSAVGRMKFNRRLGREEVT
GNGILDKDDILDVMKTLIDIRNGKGTVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDNLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVFARTNDYGFLETPYRRVV
DGKVTDEIDYLSAIEENKYVIAQASAAMDDEGRLTDELVAVRHLNEFTVMGPERVQYMDV
SPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGIERNVAQDSGVC
VVARRGGVIESVDAARIVVRVHDDEVQAGDAGVDIYNLTKYVRSNQNTCINQRSIVNPGD
VVQRGDVMADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGESALAKLDEAGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTVGKVIDVQVFTRDGVQKDERALSIEKSELDA
IRKDLNEEFRIVEQATFERLQRKLVGLSAEGGAGLKKGEVISDEFLAGLKKSEWFKIRVA
DEAISEELELAKKQLEERREQLDKRFEDKKSKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDKHGEPVDIVLNPLGVPSRMNVGQILETHLGMAATG
LGRKINAMLEQEQAKAEKVKALREFLHQIYNGEHGGRPAGHQEDLDSFSDDEILELAANL
RRGVPLATPVFDGAKESEIKALLRLADMDDSGQVRLYDGRTGDLFDRPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIELESE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcatatactgagaagaaacgcattcgcaagaatttcgctaagttgcggcag
gttatggatgtgccatacctgttggcgattcagctcgactcctaccgtcgcttcttgcag
gacggcagcgctggcgaaggacgtcgtgacgaaggcttgcacgctgcgttcaattccgta
tttccaattgtctcttactctggcaacgcagccctcgagtacgccggctaccgcctgggc
gaacccgtattcgacgtgaaagagtgtcagcagcgtggtatcacctacgcagcgcctctg
cgcgtcaaagtgcgcctggtgatctatgaccgcgattcgtctaccaaggcggtcaaagac
atcaaggagcaggaagtctacatgggcgaaatgcccctgatgactgaaaacggtaccttt
gttgtaaacggtaccgagcgtgtaatcgtgtcccagttgcaccgttcaccgggtgtgttc
tttgaccatgacaagggcaagactcactcctccggcaaactgctgtattccgcacgtatc
attccctaccgtggctcctggctcgacttcgagttcgatcccaaggatagcctgttcgta
cgtatcgaccgtcgccgtaaactgccggcaacgattctgctgcgtgcgctgggttacgaa
gcggaagagattctggaaaccttctttgataccactggctggactctggaagacgacagc
atctggatggacctgattccggaacgcctgcgcggcgaaaccatgtccttcgaaatcaag
gacccggaaggtaacgtcattgtggaagcgggtcgtcgtatcaccccgcgtcacattcgt
cagatggccaaggccggtatgcagcagctgaatgttccggctgaatacctgatcggcaag
gcgctggcacgtaacctggtcgatccgacgaccggtgagctgatcgccaactgcaacgcc
gagatcaccgaagagctgatcggcaagatgcaggtgctgggcattgatcgcatcgagaca
ctgtacaccaacgatctggattgtggatcgttcatttcagacactctgcgtatcgacccg
acccgcaaccagcttgaagcactggtcgaaatctaccgcatgatgcgtccgggcgagccg
cccacgaaggaatcagctgaagggctgtttgagaacctgttcttctctgacgaacgctat
gacctgtccgcggttggtcgtatgaagttcaaccgtcgcctgggtcgcgaagaagtgact
ggcaatggcatcctggataaggatgacattctggacgtgatgaagaccctgatcgacatc
cgtaacggtaagggcactgtcgacgacatcgaccacctgggtaaccgtcgtatccgttcc
gtcggtgaaatggccgagaaccagttccgtgtcggtctggttcgtgttgaacgcgccgtg
cgtgaacgtctgtccatggctgagtccgacaacctgatgcctcaggatctgatcaacgcc
aagccggtggccgctgcgatcaaggagttcttcggttcatcccagttgtcccagttcatg
gaccagaacaacccgctgtccgaagtgacgcacaagcgacgtgtgtctgccttgggtccg
ggtggtctgacccgcgaacgtgctggcttcgaagtgcgagacgtacacccgactcactat
ggtcgtgtatgtccgatcgagactcctgaaggtccgaacatcggcctgatcaactcgctg
gcggtattcgcccgcaccaacgactacggcttcctggaaacaccgtaccgtcgtgtcgtc
gatggcaaggtaaccgacgaaatcgattacctgtccgcgattgaagaaaacaagtatgtc
atcgcccaggcctctgcagccatggatgatgaaggtcgtctgactgatgaactggttgca
gtgcgtcacctgaacgaattcaccgtaatgggcccggaacgtgtccagtacatggacgtg
tcgccgcgtcaggtggtatccgttgcagcgtccctgattccgttccttgaacacgatgac
gccaaccgtgcattgatgggttccaacatgcagcgtcaggccgtgccgactctgcgtgcc
gagaagccgctggtgggtaccggtatcgagcgcaacgtggctcaggactccggtgtctgt
gtggttgctcgtcgtggcggtgtgatcgagtccgtagatgctgcgcgcatcgtggttcgt
gttcacgatgacgaagtacaggccggtgatgccggtgtggatatctacaacctgaccaag
tacgtgcggtccaaccagaacacctgtatcaaccagcgttcaattgtgaacccgggtgat
gtggtacagcgtggtgacgtgatggccgatggcccgtctgtcgatctgggtgagctggca
ctgggccagaacatgcgtatcgcgttcatgccttggaacggttacaacttcgaggactcc
atcctcatctccgagcgtgtggttcaggaagaccgttttaccactatccacattcaggaa
ctgacctgtgtggctcgtgataccaagctggggccggaagaaattacttccgatatcccc
aatgtgggcgagtccgcgctggccaagctggatgaagccggtatcgtacatatcggtgct
gaagtggggccgggcgacattctggtcggtaaagtgacaccaaaaggtgaaacccagctg
acaccggaagagaagctgctgcgtgcgatcttcggtgaaaaagcgtccgatgttaaggac
acttctcttcgcgtgaagaccggtactgtcggcaaggtgatcgacgttcaggtgttcacc
cgtgatggtgtacagaaagacgagcgtgctctgtctatcgaaaagtccgagctggatgcg
atccgcaaggacctgaacgaagagttccggattgtcgagcaggcaaccttcgaacgtctg
cagcgtaagctggttggcctgagtgctgaaggcggcgctggcctgaagaagggcgaagtc
atcagtgacgagttcctggcaggtctgaagaagtccgaatggttcaagattcgtgtcgca
gacgaagcgatcagcgaagaactggaactggccaagaagcagctggaagagcgtcgtgag
caactcgacaagcgcttcgaagacaagaagagcaagctgcagaccggtgatgatctggct
ccgggcgtactgaagatcgtcaaggtttacgtggccaccaagcgtcgcgtacagccgggt
gacaagatggcgggtcgtcacggtaacaagggtgttatctccgtgatcatgccggtggaa
gacatgccttacgacaagcatggtgagccggtagacatcgtccttaaccctctgggtgta
ccttcacgtatgaacgtgggtcagatcctggagacgcacctgggtatggcggcgaccgga
ctgggtcgcaagatcaatgccatgcttgagcaggagcaggccaaggccgagaaggtcaag
gcgctgcgtgaattcctgcaccagatctacaatggtgaacatggtggtcgtcctgccggt
catcaggaagatctggacagcttcagtgatgatgaaatcctggaactggcggctaacctg
cgtcgtggcgtaccgctggcaacgccggtattcgatggtgccaaggaaagtgaaatcaag
gcgctgctgcgtctggcagatatggacgacagtggtcaggtacgcctgtacgatggccgc
accggtgacctcttcgaccgtccggtaaccgtaggttacatgtacatgctgaagttgaac
cacctggtcgacgacaagatgcacgcacgttccaccggctcctacagcctggttacccag
cagccgctgggtggtaaggcgcagttcggtggtcagcgtttcggtgagatggaggtctgg
gcactggaagcttacggtgccgcctacaccctgcaggagatgctgaccgtgaagtcggac
gatgtgaatggccgtaccaagatgtacaagaacatcgtcgacggcgatcatcgtatggaa
ccgggcatgccggaatcgttcaacgtattgatcaaggaaatccgctcactcggtattgat
atcgagcttgagagcgaataa
DBGET
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