Microbacterium sediminis: E3O41_03115
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Entry
E3O41_03115 CDS
T06576
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
msed
Microbacterium sediminis
Pathway
msed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msed00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
E3O41_03115
09124 Replication and repair
03420 Nucleotide excision repair
E3O41_03115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msed03021
]
E3O41_03115
03400 DNA repair and recombination proteins [BR:
msed03400
]
E3O41_03115
Enzymes [BR:
msed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3O41_03115
Transcription machinery [BR:
msed03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
E3O41_03115
DNA repair and recombination proteins [BR:
msed03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
E3O41_03115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBR73513
LinkDB
All DBs
Position
complement(643724..645367)
Genome browser
AA seq
547 aa
AA seq
DB search
MSDGPLIVQSDRTVLLEVAHPDAESARHDLAVFAELERAPEHIHTYRITRLGLWNARAAG
HTADDMLRTLDQWSRFPVPPSVSTDIRETVNRYGRLTIERDDEGQLIFKSTDRAVLAEVS
RNKRIQPLLIAHPTPDIWVIDAWARGQIKQELLKIGWPAEDLAGYTPGTPHEIALDENGW
ALRPYQQQAVDTFRADGSGVVVLPCGAGKTLVGAGAMAATKTTTLILVTNTVSARQWRDE
LLKRTTLTPEEIGEYSGQVKEIKPVTIATYQILTSKRKGQYAHLDVLDALDWGLIVYDEV
HLLPAPVFKLTADLQARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKEIEAQGFIAP
AACYEVRVDLPADDRMEYAASADEDRYRLAATAPAKIDVVRDIIARHPGEQVLVIGQYLD
QLDELSDALGAPKITGATPVDEREVLFQAFREAKVPVLIVSKVANFSVDLPDASVAIQVS
GSFGSRQEEAQRLGRLLRPKSDGQTASFYTLIARDTVDQDFAQNRQRFLAEQGYSYTILD
VKDLVAA
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatggccccctgatcgtccagagcgaccgcacggtgctcctcgaggtcgcgcac
cccgacgccgagtcggcgcgccatgacctcgcggtgttcgcggagctggagcgcgcgccg
gagcacatccacacctaccggatcacccggctcggcctgtggaacgcgcgcgccgccggt
cacaccgccgacgacatgctgcgcacgctcgaccagtggagccggttccccgtgccgccg
tcggtctccaccgacatccgggagacggtgaaccgctacggccggctcaccatcgagcgc
gacgacgagggccagctcatcttcaagtccaccgatcgcgccgtgctggccgaggtctcg
cgcaacaagcgcatccagccgctgctgatcgcgcaccccacccccgacatctgggtgatc
gacgcgtgggcgcgcggccagatcaagcaggagctgctcaagatcggctggccggccgag
gacctcgccggctacacgcccggcaccccgcacgagatcgcgctcgacgagaacggctgg
gcgctgcgcccctaccagcagcaggccgtcgacaccttccgcgcggacggatcgggcgtg
gtggtgctgccgtgcggcgcgggcaagacgctcgtgggtgcgggcgccatggcggcaacg
aagacgaccacgctgatcctggtgacgaacacggtctcggcgcggcagtggcgcgacgag
ctgctcaagcgcaccacgctcacgcccgaggagatcggcgagtactcggggcaggtcaag
gagatcaagcccgtcacgatcgcgacgtaccagatcctgacgtcgaagcggaagggccag
tacgcgcacctcgacgtgctcgacgcgctcgactggggcctcatcgtgtacgacgaggtg
cacctgctgcccgcccccgtgttcaagctcaccgccgacctgcaggcccgccgccggctc
ggactgacggcgacgctcgtgcgcgaggacggccgcgagggcgacgtgttcagcctcatc
ggccccaagcgcttcgacgcgccgtggaaggagatcgaggcccagggcttcatcgccccc
gccgcctgctacgaggtccgcgtggacctgccggccgatgaccgcatggagtacgcggcg
agcgccgacgaggaccgctaccgcctggcggcgacggcaccggccaagatcgacgtggtc
cgcgacatcatcgcccgccaccccggcgagcaggtgctcgtgatcggccagtacctcgac
cagctcgacgagctgagcgacgccctcggcgccccgaagatcaccggcgcgacgcccgtg
gacgagcgcgaggtgctgttccaggccttccgcgaggccaaggtcccggtgctgatcgtg
tcgaaggtcgccaacttctcggtcgacctgcccgacgcctcggtcgcgatccaggtctcc
ggctcgttcggctcccgccaggaggaggcccagcgcctgggccgcctgctgcgccccaag
agcgacggccagaccgccagcttctacacgctgatcgcccgcgacaccgtcgatcaggac
ttcgcgcagaaccgccagcgcttcctcgccgagcagggctacagctacacgatcctcgac
gtgaaggacctcgtcgccgcctag
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