Microbacterium sediminis: E3O41_03785
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Entry
E3O41_03785 CDS
T06576
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msed
Microbacterium sediminis
Pathway
msed03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
E3O41_03785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msed03400
]
E3O41_03785
Enzymes [BR:
msed01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
E3O41_03785
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
E3O41_03785
DNA repair and recombination proteins [BR:
msed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
E3O41_03785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QBR73624
LinkDB
All DBs
Position
complement(790548..791405)
Genome browser
AA seq
285 aa
AA seq
DB search
MPEMPEVEGLVRFLRNRATGLTVVKAQVAQIAALKTFDPPLTALTGATVTGAERHGKFVD
LVLGDRLHLVFHLAKAGWLRWSDQLPATVIKPGRSPIALRVGFDDGSGFDLTEAGTKKSL
AAYVVRDPRDVPGIATLGPDPLGLGEEAFAAVLRGRRTQIKGLLRDQSVIAGIGNAYSDE
ILHAARLSPYAIAATLTPDEVARLHAAMHRTLADAIGAAEGKPPADLKDAKRRGMAVHAR
AGQACPVCSDTVRSVFFADRSMEYCPTCQTGGKILADRRLSRLLK
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccggagatgcccgaggtcgagggactggtgcggttcctgcgcaaccgcgccaccggg
ctcacggtggtgaaggcgcaggtggcgcagatcgcggcgctgaagacgttcgacccgccg
ctgactgcgctgaccggcgccaccgtcacgggggcggagcggcacgggaagttcgtggat
ctcgtgctcggcgaccggctgcacctcgtgttccacctggccaaggcgggctggttgcgg
tggtccgatcagctgccggcgaccgtgatcaagccgggccgctcccccatcgcgctgcgc
gtcgggttcgacgacggctcggggttcgacctcaccgaggcgggcacgaagaagtcgctc
gccgcctacgtggtgcgcgacccgcgcgacgtgccgggcatcgcgaccctcggcccggat
ccgctcggcctcggcgaggaggccttcgccgcggtgctgcgcgggcggcgcacccagatc
aaggggctgctgcgcgatcagtcggtcatcgcgggcatcggcaacgcctacagcgacgag
atcctccacgccgcccgcctgtcgccgtacgcgatcgcggccacgctcacgcccgacgag
gtcgcgcgcctgcacgcggcgatgcaccggaccctcgccgatgccatcggcgccgccgag
ggcaagccgccggccgacctcaaggacgccaagcgccggggcatggccgtgcacgcccgg
gccgggcaggcgtgcccggtgtgcagcgacaccgtgcgatcggtgttcttcgccgatcga
tcgatggagtactgccccacctgccagaccggcgggaagatcctcgccgaccgccggctg
tcgcgcctgctgaagtga
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