Microbacterium sediminis: E3O41_07415
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Entry
E3O41_07415 CDS
T06576
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msed
Microbacterium sediminis
Pathway
msed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3O41_07415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msed03019
]
E3O41_07415
03009 Ribosome biogenesis [BR:
msed03009
]
E3O41_07415
Enzymes [BR:
msed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E3O41_07415
Messenger RNA biogenesis [BR:
msed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3O41_07415
Ribosome biogenesis [BR:
msed03009
]
Prokaryotic type
rRNA processing factors
E3O41_07415
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Motif
Other DBs
NCBI-ProteinID:
QBR75446
UniProt:
A0A4P7FIH9
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All DBs
Position
complement(1564661..1567135)
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AA seq
824 aa
AA seq
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MTPADEGTEAVASEPTEAPEGADEAETPEGADEAETPEGAEPAAAEGAEPAAEPSDAATE
PEASAAEPEASAAEPAEAEPAAEAEPAADAEPAASTEAPAPEPEAPAGPVTAVSLGLLPE
TFVSQVSTALHFYAPDISLLPPAPVEDEDEDDDDQDGGSSRGRGRNRRRRAGNGASAPAE
RPSRAQRPVEVITEPQKIKGSTRLEAKKQRRRDGREAGRRRPVVTEAEFLARREAVDRQM
IVRSKSGRVQIAVLEDKVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRN
AVLYSGEVDWDAVETGNQPRRIELALKPGDKVLVQVTKDPVGHKGARLTSQISLPGRYLV
YVPGGAMNGISRKLPDTERSRLKKILKEVLPESSGVIVRTAAEGATEEQLTRDVNRLTAQ
WAHIQQKVEKGSAPSLLHSEPDLLVKIVRDVFNEDFTKMLIQGDDAHSTITTYLEQVAPD
LLERVERYEGERDPFDEFRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVG
SGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRD
RTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEPCEVCAGRGVIVHHDPVVKHRPAATGNG
NGNGRRGRGGNGGSGANGAAPAPSAAATHTITEGVKSALAQIAASTIAPAPATPAAEPAK
LDPDLAIELPEGPRADSGRADEPGAEERPRKRRKRPVERERAERERPERPAPRKSEAEQL
LDSVLNALPEPKAPGQGRNRSRRVTTAALTGTAVSVNPVAPAGE
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ctgacccccgcggacgagggcacggaggcggtcgcctccgagccgaccgaggctccggag
ggcgccgacgaggccgagactccggagggcgctgacgaggccgagactccggagggcgct
gagcccgcagcggccgagggcgccgagcccgcagcggagccgagcgacgccgcgaccgag
ccggaggcgtccgccgccgagccggaggcgtccgccgccgagcccgcggaggccgagccc
gccgcggaggccgagcccgccgcggacgcggagcccgccgcgtcgaccgaggcccccgca
cccgagcccgaggcccccgcgggccccgtcaccgccgtgagcctgggcctgctgcccgag
acgttcgtctcgcaggtgtcgaccgcgctgcacttctacgcgcccgacatcagcctgctg
ccgccggcgcccgtcgaggacgaggacgaggatgacgacgaccaggacggcggttcgtcc
cgcggtcgcggccgcaatcgccgccgccgcgccggcaatggcgcgtccgcgccggcggag
cgtccgtcgcgcgcgcagcgcccggtcgaggtgatcaccgagccgcagaagatcaagggc
tccacccgcctggaggccaagaagcagcgccgccgcgacggccgcgaggccggccgtcgc
cgccccgtcgtcaccgaggccgagttcctcgcccgccgcgaggccgtcgaccgccagatg
atcgtgcgctccaagagcgggcgcgtgcagatcgcggtgctcgaggacaaggtgctcgtc
gagcactacgtggcgcgcaaccaggacgcctcgctcatcggcaacgtctacctcggtcgc
gtgcagaacgtgctgccgagcatggaggccgcgttcgtcgacatcggccgcggccgcaac
gccgtgctctattcgggcgaggtcgactgggacgccgtcgagaccggcaaccagccccgc
cgcatcgagctggccctcaagccgggcgacaaggtgctcgtgcaggtcacgaaggacccg
gtcggccacaagggcgcgcgcctgacgagccagatctcgctcccgggtcgctacctcgtg
tacgtgcccggcggcgccatgaacggcatctcgcgcaagctccccgacaccgagcgctcg
cgcctgaagaagatcctcaaggaggtgctgccggagtcgtcgggcgtcatcgtccgcacc
gccgccgagggcgccaccgaggagcagctgacgcgcgacgtcaaccgcctcaccgcccag
tgggcgcacatccagcagaaggtcgagaagggcagcgccccgagcctgctgcacagcgag
cccgacctgctcgtgaagatcgtccgcgacgtcttcaacgaggacttcacgaagatgctc
atccagggcgacgacgcgcacagcacgatcacgacgtacctcgagcaggtggcgccggat
ctgctcgagcgcgtggagcgctacgagggcgagcgcgacccgttcgacgagttccgcatc
accgagcagatcgagaaggccctcgaccgcaaggtctggctgccctcgggcggatcgctc
gtgatcgaccgcaccgaggcgatgacggtcgtcgacgtcaacacgggcaagttcgtcgga
tccggcggcaacctcgaggaaaccgtcacgaagaacaacctcgaggcggccgaggagatc
gtgcgccagctgcggctgcgcgacatcggcggcatcatcgtggtcgacttcatcgacatg
gtgctcgagtccaaccgcgacctcgtgctgcgccgcctggtggagtgcctgagccgcgac
cgcaccaagcaccaggtcgccgaggtcacctcgctcggtctcgtgcagatgacgcgcaag
aagctgggcctgggcctgctcgagacgttcagcgagccgtgcgaggtctgcgcgggccgc
ggcgtcatcgtgcaccacgatcccgtcgtgaagcaccgccccgccgccaccgggaacggc
aacggcaatggccgtcgcggacgcggtggcaacgggggatcgggcgcgaacggcgccgct
ccggcgccctcggcggcggcgacccacacgatcaccgagggcgtgaagtcggcgctcgcg
cagatcgcggcctcgacgatcgcgcccgccccggcgacgccggccgccgagccggccaag
ctggacccggacctcgcgatcgagctgccggagggcccgcgggccgacagcggccgcgcc
gacgagcccggcgcggaggagcgcccccgcaagcgccgcaagcgccccgtggagcgcgag
cgcgccgagcgcgagcgcccggagcgacccgcgccgcgcaagtccgaggccgagcagctg
ctcgactcggtgctcaacgcgttgcccgagccgaaggccccgggccagggccgcaaccgc
agccgccgcgtcaccacggccgccctcacgggcaccgcggtgtcggtcaaccccgtcgcg
ccggcaggggagtga
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