Microbacterium sediminis: E3O41_09960
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Entry
E3O41_09960 CDS
T06576
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msed
Microbacterium sediminis
Brite
KEGG Orthology (KO) [BR:
msed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msed03032
]
E3O41_09960 (topA)
03400 DNA repair and recombination proteins [BR:
msed03400
]
E3O41_09960 (topA)
Enzymes [BR:
msed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E3O41_09960 (topA)
DNA replication proteins [BR:
msed03032
]
Prokaryotic type
DNA Topoisomerases
E3O41_09960 (topA)
DNA repair and recombination proteins [BR:
msed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E3O41_09960 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QBR74685
LinkDB
All DBs
Position
complement(2093683..2096388)
Genome browser
AA seq
901 aa
AA seq
DB search
MASGKKLVIVESPTKMKSIQSYLGDDYEVLSSVGHIRDLADKRDIPEKDRAAYGKYSIDI
ENGFEPYYVVSDRKTKTVAELKRAVKNASEVLLATDEDREGEAIAWHLLETLKPKVPVKR
MVFHEITKDAIQKAVEHTRELDTSLVDAQETRRVLDRLYGWDVSPVLWRKVGSGRDGQTL
SAGRVQSAAMRMVVDRERERMAFVAANYWSIEATAARAAEGFAVKAVRLDGAPIATGRDF
DDAGELKRAVVVLSEQDATALATALDRAAAATVTKVEAKPGTRRPYAPFTTSTLQQEAGR
KLGMTAKTTMSVAQSLYERGYITYMRTDSTNLSTQAVQAAREQAVSLYGDKAVPLKPRVY
ASKSRNAQEAHEAIRPSGDRFRTPSEVAGQLARDEQRMYDLIWKRTVASQMADAKFETTT
VTLEAQADGKRVELTASGTVYTFKGFLEAYEEGRDEKRNEADKTDEQSLPAVAEGDTLDL
REAEAKGHQTSPKPRYTEATLVKALEDKGIGRPSTFASIIGVILDRGYVVKRGQALVPTW
LAFSVTRLLEQHFAELVDYDFTAELEDDLDAIARGEQRRADWLKAFYFGGDGHPGLRNIV
ENLGEIDAREINATKLTDVATLRFGRYGPYLEVINPEAPDEKPRIINVPEDLAPDELTPE
KVQELIDAPVAGNRVLGENPANGKIIVVKDGRFGPYLEEEDPVDPEAADAETGEVADEKP
KKRTAKKDEPKPRRASLFKSMSPELIDLQTAIQLLDLPRVVGVDPESGEEITAQNGRYGP
YLKKGTDSRSLQTEDQIFDITLDEALEIYKQPKYGARRAASALKEFDADPVSGKPIKVRD
GRFGPYVTDGETNATIPRGESVDDITFERAVELIAEKRAKGPAKKRTTTRKTTTRKTAAK
K
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
ttggcatcaggcaagaagctcgtcatcgtcgagtcgccgacgaagatgaagtcgatccag
agctacctcggcgacgactatgaggtgctcagctccgtcggtcacatccgcgacctcgcg
gacaagcgggacatcccggagaaggatcgcgccgcctacggcaagtactcgatcgacatc
gagaacggcttcgagccctactacgtggtcagcgaccgcaagacgaagaccgtcgccgag
ctcaagcgcgccgtcaagaacgcctccgaggtcctgctcgccaccgatgaggaccgcgag
ggcgaggccatcgcctggcacctgctggagaccctcaagccgaaggtgcccgtcaagcgg
atggtcttccacgagatcaccaaggacgcgatccagaaggccgtcgagcacacccgcgag
ctcgacacctcgctcgtcgacgcgcaggagacccgccgcgtgctcgaccgtctctatggc
tgggacgtctcgcccgtgctctggcgcaaggtcggcagcggccgcgacggtcagacgctc
agcgcgggccgcgtgcagtcggccgcgatgcgcatggtcgtcgaccgcgagcgcgagcgc
atggcgttcgtcgccgcgaactactggagcatcgaggccaccgccgcccgcgccgccgag
ggcttcgccgtcaaggcggttcgcctcgatggcgcacccatcgcgaccggccgcgacttc
gacgacgccggcgagctcaagcgcgccgtcgtcgtgctgtcggagcaggacgccaccgcg
ctcgccaccgccctcgatcgtgccgccgcggccacggtcaccaaggtcgaggccaagccc
ggcacgcgccgcccgtatgcgccgttcaccacctccacgctgcagcaggaggcgggccgc
aagctcggcatgaccgccaagacgacgatgtcggtcgcgcagagcctgtacgagcgcgga
tacatcacctatatgcgtacggactcgaccaacctcagcacgcaggccgtccaggccgcg
cgcgagcaggcggtgagcctgtacggcgacaaggccgtgccgctcaagccgcgcgtctac
gcctcgaagagccgcaacgcccaggaggcgcacgaggcgatccgtccctcgggcgaccgc
ttccgcacgcccagcgaggtcgccgggcagctcgcccgcgacgagcagcgcatgtacgac
ctcatctggaagcgcaccgtcgccagccagatggccgacgccaagttcgagaccaccacc
gtcacgctcgaggcgcaggccgacggcaagcgcgtcgagctgaccgcgtcgggcacggtc
tataccttcaagggcttcctcgaggcgtacgaggagggccgcgacgagaagcgcaacgag
gccgacaagaccgacgagcagtcgcttccggcggtcgccgagggcgacacgctcgatctg
cgcgaggccgaggccaagggtcaccagaccagcccgaagccgcgttacaccgaggccacc
ctcgtcaaggcgctcgaggacaagggcatcggtcgcccctccacgttcgcgagcatcatc
ggcgtgatcctcgatcgcggctacgtcgtcaagcgcggccaggcgctcgtgcccacctgg
ctcgcgttcagcgtgacgcggctgctcgagcagcacttcgccgagctcgtggactacgac
ttcacggccgagctcgaggacgacctcgacgcgatcgcgcgcggcgagcagcgccgagcc
gactggctcaaggcgttctacttcggcggcgacggccacccgggcctgcgcaacatcgtc
gagaacctcggcgagatcgacgcgcgcgagatcaacgcgacgaagctcaccgacgtcgcc
acgctccgcttcggccggtacggcccctacctcgaggtgatcaaccccgaggctcccgac
gagaagccccgcatcatcaacgtgcccgaggacctcgcacccgacgagctcacgcccgag
aaggtgcaggagctcatcgacgctcccgtcgccgggaaccgcgtgctcggcgagaacccc
gccaacggcaagatcatcgtcgtcaaggacggccgcttcggtccgtacctcgaggaggag
gatccggtcgatccggaggccgccgacgccgagacgggtgaggtcgccgacgagaagccg
aagaagcgcaccgcgaagaaggacgagcccaagccgcgccgcgcgtcgctgttcaagagc
atgtcgccggaactgatcgacctgcagacggcgatccagctgctcgacctgccgcgcgtc
gtcggcgtcgaccccgagtcgggcgaggagatcaccgcgcagaacggccgctacggcccg
tacctcaagaagggcaccgactcccgctcgctgcagaccgaggaccagatcttcgacatc
accctcgacgaggcgctcgagatctacaagcagccgaagtacggcgcccgccgcgccgcc
agcgcgctcaaggagttcgacgccgatccggtcagcggcaagccgatcaaggtgcgcgac
ggccggttcggcccctacgtcaccgacggcgagacgaacgccacgatcccgcgcggcgag
tcggtggacgacatcacgttcgagcgcgccgtggagctgatcgccgagaagcgcgccaag
gggccggccaagaagcgcacgacgacgcgcaagaccaccacgcgcaagaccgccgcgaag
aagtga
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