Metabacillus sediminis: WCV65_00365
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Entry
WCV65_00365 CDS
T10864
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msee Metabacillus sediminis
Pathway
msee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCV65_00365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msee03400
]
WCV65_00365 (mfd)
Enzymes [BR:
msee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCV65_00365 (mfd)
DNA repair and recombination proteins [BR:
msee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCV65_00365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WXB97030
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All DBs
Position
69595..73119
Genome browser
AA seq
1174 aa
AA seq
DB search
MKSLHSFFYSNEDFKTVVTGLKEGLREQLLAGLSGSARSLFTSSLYMETGESVLVVTHNL
YQAQKVFEDLANLAGGNVFLYPVNELIASDMAVASPELMAQRMEVLNHLASGKKGIVVAP
AAALRRLLPAKSMWNASQKTLSVGDELDTDSFFSWLSQIGYERTNMVSAPGEFSVRGGII
DLYPLTEENPVRIELFDIEVDSIRSFDLADQRSLKKMKNIVLGPAKEILLQREHLERGEQ
QLEAALSKSLKKLKNDQQKELLLQNVQYELEMLRNGQVTEEMHKYLSFFYEKPASLLDYF
DGTATVVMDEISRIHEMMEQLESEEAEWITSMLENGKIVHDVKISREQPLALPANPIVYL
SLFLRHVPHTSPQNILNVSCKQMQNFHGQMNVLKGELDRWNKGKFITVFLGASAERVQKL
EQVLQDYDMSATIMKDGDPLKPGKAYILEGDLQTGFELPLQKIAVITEEELFKKRAKKQP
RRQKLSNAERIKSYSELQTGDYVVHINHGIGKYLGIETLEINGNHKDYLHIRYQGSDKLY
VPVEQIDQVQKYVGSEGKEPKIYKLGGNDWRRVKKKVESSVQDIADDLIKLYAEREASRG
YAFSPDGEMQRDFEAAFPYQETEDQIRSIHEIKMDMERERPMDRLLCGDVGYGKTEVAIR
AAFKAIADGKQVALLVPTTILAQQHYETVRERFQDYPMTVGLLSRFRTRKEMNETTKGLE
NGTVDLVIGTHRLLSKDVKYKNLGLLIIDEEQRFGVTHKEKIKQMKANVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRYPVQTYVVENNGGLVRESIERELSRGGQVYVLYNRVE
DISRKADEISMLVPDARVTYAHGKMTENELESVMLNFLEGQSDVLVSTTIIETGVDIPNV
NTLIVYDADKMGLSQLYQLRGRVGRSSRVAYAYFTYRKDKVLTEVAEKRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDAPKEKAFEPEI
DLDLDAYIPEAYISDGKQKIDMYKRFRGIATEEDLAELQEEMTDRFGTYPSEVSYLFKVA
EAKLLAIREKVEIIKEAKDVIYMSINEEASQRADGQKLFELSSQYGRKVGLGMDANKLKI
SVQTKGLSAEERLSILIGLLKGLKHVKKEEISAS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtctgcactcgtttttttattcaaacgaagattttaaaaccgttgttaccggt
ctgaaagaaggattgagagagcagctgctggctgggctttccggttcggcaaggtctctt
ttcacatcctctttatatatggaaacaggagaatccgtcctcgttgtcacacacaatctc
taccaggctcaaaaggtttttgaggacttggcaaatttagcgggcggtaatgtttttctc
tatcctgttaatgaactgattgcttctgatatggcggtagccagtccggagctgatggct
cagaggatggaagtgctgaatcatttggcctctggtaaaaaaggcattgtggttgcaccg
gctgctgcattgcggagactgcttccagccaaaagcatgtggaatgcaagccagaaaaca
ctttcggtcggagatgaactggatacggattcatttttcagctggctttcccaaattggc
tatgaacggaccaacatggtttcggcaccgggagaattcagtgttcgcggggggattatt
gacctttatccgctgacggaggaaaatcccgtccggattgaactgtttgatattgaagtg
gactccatccgctcatttgaccttgcagatcagcgttcattgaaaaagatgaagaacatc
gtgcttggtcctgcaaaagaaattctgctgcagcgtgagcatcttgagcgcggcgaacag
caattagaagctgctctttccaaatcattgaaaaagctgaaaaatgaccagcagaaggaa
ttgctgctccaaaatgtccagtatgagcttgaaatgctccggaatggccaggttacggag
gaaatgcataaatacctttccttcttctatgaaaagcctgctagtttactagattatttt
gatgggactgcaaccgttgtgatggatgaaatcagccgtatccatgagatgatggagcag
cttgaatcggaagaagcggaatggattacgagcatgcttgaaaacgggaagattgtccat
gatgtgaaaatttcccgcgagcagcctctggctcttccagccaatccaatcgtatacctt
tccttgtttttaagacatgtccctcatacaagtcctcaaaatatcttaaacgtatcatgc
aagcaaatgcagaattttcatggccagatgaacgtcttaaagggcgagctcgaccgatgg
aacaaaggaaagttcatcactgtttttctgggagccagtgcagagcgggtgcaaaagctc
gagcaggtgctccaggactatgatatgtcagcaacaattatgaaagatggagatcctctt
aaacctggaaaggcttatattttagagggggatctgcaaacgggctttgagcttcctttg
caaaaaattgccgtcattacagaagaagagctgttcaaaaagcgcgctaagaagcagccg
agacgtcagaagctgtccaatgccgagcggattaagagctactccgagcttcaaacaggt
gattatgtcgtgcacattaatcatggaatcggaaagtatttagggattgaaacgcttgaa
atcaacggcaatcacaaggattatcttcatatccggtatcagggctctgacaagctttac
gttccggtagagcaaattgatcaggttcaaaagtacgttggatctgaagggaaagaaccg
aaaatttataagcttggcggaaatgactggcgccgggtgaagaaaaaagtggaatcatcc
gttcaggatattgcggatgatttaattaagctttatgcggaaagggaagcaagcagaggc
tatgccttttctccggatggagaaatgcagcgcgatttcgaggctgcgttcccttatcag
gaaacagaggatcagattcgttccatccatgaaattaaaatggatatggagcgggaacgt
ccgatggaccggcttctttgcggagatgttggctacgggaaaacagaggtagcaatccgg
gcagccttcaaggctattgctgatggaaagcaggtagcactccttgttccaacgacgatc
ctagcccagcagcactacgaaactgttcgcgaacggttccaggactatcctatgactgtc
ggtctcctaagcagattccgaacccgcaaggaaatgaatgaaacgacaaaaggcctggag
aatggaacggtagatcttgtaataggaacccaccgtcttctttctaaggatgttaaatat
aagaatctgggactgctcataattgatgaggagcagcgctttggtgttacccataaggaa
aaaatcaaacaaatgaaagcaaacgtagatgtactgacgcttaccgcgactccaattcca
agaacactgcatatgtcgatgctcggagtaagggatttgtcggtcatagagacgccgccg
gaaaaccgctaccctgtgcagacatatgttgtggaaaacaacggaggacttgtcagagaa
tccattgaacgtgagctctcaaggggcgggcaggtctatgttctttacaaccgcgtagag
gacatcagccgcaaagccgatgaaatttcaatgcttgttccagatgcaagagtcacgtat
gcacatgggaaaatgacggaaaacgaattggaatccgtcatgcttaacttccttgaaggc
cagtcagacgtcctggtcagtaccacgattattgaaacgggcgtcgacatcccgaacgta
aacactcttattgtgtatgatgcagataaaatgggactctcccagctctatcagttaaga
gggcgtgtcggccgatcaagcagggtcgcatatgcttacttcacgtaccggaaggacaaa
gttcttacagaagttgcagaaaaaaggctgcaggcgataaaagaatttaccgagcttgga
tccggattcaaaatcgcaatgcgcgatttatccattcggggtgcaggaaaccttcttgga
gcacagcagcatggcttcattgattcagtcggatttgatttatattcccagatgctgaaa
gaggccatcgaagaacgcaaaggcgatgcaccgaaagaaaaagcatttgaaccggaaatt
gatctggatctggatgcatacattccagaggcgtacatttcagatggaaaacagaaaatc
gatatgtacaaacgcttcagaggaattgccacagaagaagatctagcagagctgcaggaa
gaaatgacggatcgcttcggcacatatccttccgaagtaagctatctctttaaagtggct
gaagcgaaacttcttgcgattcgtgaaaaagtcgaaatcattaaagaagcgaaggacgtt
atttacatgtccatcaacgaggaggccagccagcgcgcagatggccaaaagctgtttgaa
ttaagcagccagtacggccgtaaagtcggtctcggaatggacgcgaacaaattaaaaatt
tctgtccagacaaagggcttaagtgcggaagaacgtttatctattttaatcggccttctt
aaaggactaaagcatgtgaaaaaggaagaaatttcagccagttga
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