Metabacillus sediminis: WCV65_07535
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Entry
WCV65_07535 CDS
T10864
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
msee Metabacillus sediminis
Pathway
msee03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WCV65_07535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msee03400
]
WCV65_07535
Enzymes [BR:
msee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WCV65_07535
DNA repair and recombination proteins [BR:
msee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WCV65_07535
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WXB98985
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Position
complement(1419480..1421303)
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AA seq
607 aa
AA seq
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MLPVLASELPAGPEWAYEVKYDGFRAILYIERDFITLISRNGKDLSILFPEILEFVHKLM
PSIQPFLPVTLDGELASLRSSLSADFMDIQVRGRLKSANRIQQASANDPCKLLVFDLLHY
KGRSLMNEPYSLRKGQLEVFFKELKLPIHTSADSAELLQMVPSYKKASHLWGLIELHGAE
GIVAKHKNGKWTAGARTETWKKVKNYRRSTLFITGYDEKNGYFNTGLFKNGQVFSLGSFS
HGITGQEREALIQTIKKNASSSSGQVYQVAPAICVYVNFLSFYKEQLREPSFASFNFKAD
PAQCTWEQFQLDAAPIHHEVQLTHTDKPIWNEPAINKLQYILYLLNIAPYMLPLLRNRTL
TLIRYPHGSAGERFYQKNKPDYAPDFIQSARADGIDYMRCEFLSDLIWLGNQLALEFHLP
FQRISDSHPMEIVFDLDPPSRDEFELAIFAAKQLEKLFREFNLDSFPKLSGGKGIQIHIP
LSGKDLSFSDTRLFTAFFADFLTKQFPEKFTTERLKKNRGDKLYVDFLQHAEGKTIIAPY
SPRGAEGACIAAPLLWEEVTEGLTPMNYTIATIFDHLKKRGCPLKHYFHSPQDETVSKII
SFIRGNG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgctccctgtcctcgcctctgagcttccggcaggacccgaatgggcttacgaagtgaag
tatgatggctttcgcgccattttatacatagaaagggacttcatcactctcatcagccgg
aatggaaaggatttaagtattctttttccggaaattttagagtttgtccataagctcatg
ccttctatccagccgttcctcccggttactctagatggtgaactcgcttcactccgttca
tctctttccgctgattttatggatattcaagtaagaggacgtttgaaatcagcgaatcga
attcagcaagcttctgctaatgatccgtgcaagctgcttgtattcgatttgcttcactac
aagggaagatcgcttatgaacgaaccttattctctaaggaaaggacagctcgaggtattt
ttcaaagagctgaagcttcccattcatacatctgcggactctgctgaacttctccaaatg
gtcccctcctataagaaggcaagtcatctatggggactcattgaacttcacggagcagaa
ggaatcgtggcaaagcacaaaaatgggaaatggacagctggggcaagaacggaaacatgg
aaaaaggtaaagaactatagaaggtccaccctttttattacaggatacgatgaaaaaaac
ggatattttaatacagggctgttcaaaaatggccaggtattctcgcttggctcattttcg
catggaataaccggacaggaacgagaggctcttattcaaacaattaaaaagaacgcttct
tcctctagcggccaggtttatcaggttgcacctgctatttgcgtttatgttaatttcctt
tctttttacaaagaacagcttagggaaccatcctttgcttcattcaacttcaaagcagat
cctgcgcaatgcacttgggaacaatttcagctggatgcagcacccattcatcatgaggtt
cagctcacccacacggataagcctatttggaatgaaccagcaattaataagcttcaatat
atcctttacttattaaatattgctccatatatgctgcctcttttaagaaatcggacactg
acgctaatccgttatcctcatggttctgccggagaacgattttaccagaagaacaagccc
gattacgcccccgattttattcaatcggcccgtgctgatggcattgattatatgcgctgt
gagtttctatcggacttaatttggcttggcaatcagcttgctctggaattccatttgccc
ttccagagaatttcagattcccatcctatggaaattgtttttgatcttgatccgccttca
agggacgaatttgagctcgcaatttttgccgcaaagcagcttgaaaagctattcagggaa
tttaatcttgattccttccctaaactctcaggcggaaaaggcattcaaatccacatcccg
ctttccggtaaagatttgagctttagcgatacaagattgtttacagcatttttcgctgac
tttttaacaaaacagttccctgaaaaattcacaactgagcgcttgaaaaagaaccgcgga
gacaagctttacgtagattttcttcagcacgcagaaggtaagaccatcattgccccatat
tctcccagaggtgctgaaggagcctgtatcgccgctccccttttatgggaggaagtaact
gaaggtcttacacctatgaattatacgattgcaaccatttttgaccatctaaaaaaaaga
ggctgcccgctcaagcactattttcatagccctcaagacgaaacagtctctaaaatcatt
tcatttattaggggaaacggttag
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