Metabacillus sediminis: WCV65_09840
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Entry
WCV65_09840 CDS
T10864
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
msee Metabacillus sediminis
Brite
KEGG Orthology (KO) [BR:
msee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msee03032
]
WCV65_09840 (topA)
03400 DNA repair and recombination proteins [BR:
msee03400
]
WCV65_09840 (topA)
Enzymes [BR:
msee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
WCV65_09840 (topA)
DNA replication proteins [BR:
msee03032
]
Prokaryotic type
DNA Topoisomerases
WCV65_09840 (topA)
DNA repair and recombination proteins [BR:
msee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
WCV65_09840 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Motif
Other DBs
NCBI-ProteinID:
WXB98752
LinkDB
All DBs
Position
1868248..1870320
Genome browser
AA seq
690 aa
AA seq
DB search
MSDYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQIGVDVTQNFAPKYITIRGK
GDVLKELKSAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDVHSDCRVVFNEITKDAIKE
SFKHPRAINMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDREK
EIHAFIPEEYWTIESQFFKGKDQFEGSFYGIDGKKRELKTEEDVKEVTSRIKGNSFNVTN
VTKKERKRNPAVPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKEGTVGLITYMR
TDSTRISETAQTEAAGYIEQQYGQDYLGVKKAVKKNSNSQDAHEAIRPTSTLRDPSSMKE
YLSRDQLRLYKLIWERFLASQMASAVLDTMSVDLDNNGVVFRATGSKVKFPGFMKVYVEG
NDDQIEEKDRYLPELAAGDEVFSKDTEPAQHFTQPPPRYTEARLVKTLEEQGIGRPSTYA
PTLDTIQKRGYVSLDNKRFIPTELGEIVLELIMEFFPEIIDVEFTARMENSLDEVEDGHI
QWVKIIDDFYKDFEKRIIIAETEMEEVEIKPEYAGVDCEECGNPMVIKMGRYGKFMACSN
FPDCRNTKPIVKEIGVPCPKCDKGNVVERKSKKKRLFYGCDRYPECDFLSWDKPIARNCP
RCEAMLVEKKLKKGVQVQCTACDYKEEQQK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattacctggttattgtagaatcaccagcaaaagcgaaaacaattgagaagtat
ttagggaaaaagtttaaagtgaaagcatctatgggacacgtccgcgatttgccgaaaagt
caaattggtgttgacgtaacacaaaactttgcgcctaagtatattacgatcagaggaaaa
ggcgatgtattaaaggaattaaaatctgctgcaaaaaaagcaaagaaagtctatctcgcg
gctgacccggatcgcgaaggggaagcaattgcctggcatctggcccacagccttgatctt
gatgtccattcggactgccgggttgtattcaatgagattacaaaggacgcaattaaagag
tcttttaaacatccaagagcgattaatatggacttggtggatgcccagcaggcgagaaga
atactggatcggcttgtaggctataaaataagtccaattctttggaaaaaagttaaaaaa
ggtcttagtgcaggacgggttcaatcggttgctctccggctgatcatcgacagggaaaaa
gagatccatgcatttatacctgaagaatactggacaatagaaagccaatttttcaaaggc
aaggatcaattcgaaggatctttttacggaattgacggaaaaaaacgcgagcttaaaacg
gaagaggatgtaaaagaagtaacatcccgcatcaagggtaattcgtttaacgtgacgaat
gtgacaaagaaagagagaaagcgcaaccctgcggtgccgtttacaacatccaccttacag
caggaagctgcccgaaagctgaatttcagagccaagaaaacgatgatgattgcccagcaa
ttatatgaaggaattgatcttggcaaagaggggaccgtcgggttaatcacatatatgaga
acggattccacaagaatttctgaaaccgctcaaactgaagcagcaggatacattgaacag
cagtacggacaagactatctgggtgttaagaaagccgtgaagaaaaattccaattcgcag
gacgcccatgaagccattcgtccgacatctacattaagagacccatcctccatgaaggaa
tacttgagccgtgaccagctccgactatacaaattgatttgggagcgctttttagcaagc
caaatggcttcagctgtacttgacacaatgagcgtagacttagataataatggagttgtc
ttcagagctacagggtcaaaggttaaatttcctggtttcatgaaagtatatgttgaagga
aatgatgatcagatagaagaaaaggaccgctacttgccggagcttgccgcaggtgacgaa
gtattttcaaaagatacggagcccgctcagcattttacccagccgcctccaaggtatacg
gaagcacgtttggttaaaacgcttgaagagcagggaatcgggagaccgtccacctatgcg
cctacacttgatacgattcaaaaaagagggtacgtatcacttgataacaagcgctttatt
ccgacagagcttggagaaattgtcctggaactgattatggagttttttccggaaataatt
gatgtcgaatttacagcccgtatggaaaacagtctggatgaagtggaagacggccatatc
caatgggtaaaaattatagatgatttctacaaagattttgaaaaacggattattattgcc
gaaaccgagatggaagaagtagaaatcaagccggaatatgcaggtgtagattgtgaagag
tgcggcaacccaatggttatcaagatgggccgctacggtaaattcatggcatgctccaat
ttcccggactgccgcaatacgaagcctattgtgaaagagatcggagttccttgtcctaaa
tgcgataaaggaaatgtcgttgaacgcaaatccaagaagaaacgtcttttttacggctgc
gacagatatcctgagtgtgatttcctgtcatgggataagccgatagcaaggaactgcccg
cgctgtgaagcgatgctggttgaaaagaagctgaaaaaaggtgttcaggttcaatgtaca
gcctgtgattacaaagaagagcagcaaaagtaa
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