Metabacillus sediminis: WCV65_18045
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Entry
WCV65_18045 CDS
T10864
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
msee Metabacillus sediminis
Pathway
msee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCV65_18045 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msee03019
]
WCV65_18045 (rnr)
03016 Transfer RNA biogenesis [BR:
msee03016
]
WCV65_18045 (rnr)
Enzymes [BR:
msee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
WCV65_18045 (rnr)
Messenger RNA biogenesis [BR:
msee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WCV65_18045 (rnr)
Transfer RNA biogenesis [BR:
msee03016
]
Prokaryotic type
tRNA degradation factors
WCV65_18045 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
S1_RRP5
OB_Dis3
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
WXB96416
UniProt:
A0ABZ2NF57
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Position
complement(3457856..3460198)
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AA seq
780 aa
AA seq
DB search
MNQDIQKHVDRLLSFMRDEAYKPLTIQELEDAFGVGEADVFRDFVKALVHMEEQGLVVRT
RSNRYGLPEKMNLVKAKLSGHAKGFAFAVTEDPADDDIFIPPNELGNAMHGDTVLVRVSS
NSSGARKEGTIIRILDRGMKEVVGTYTESRNFGFVIADDKKIANDIFIPRDASNGAVEGH
KVVVKITTYPEGRMSAEGEVIQILGHKNDPGVDILSVIHKHGLPGGFSPDVLKQANDVPD
EIDEADYKGRRDLRNETIVTIDGADAKDLDDAVTVTKLENGHYKLGVHIADVSHYVTEDS
PIDVEALDRGTSVYLVDRVIPMIPHRLSNGLCSLNPKVDRLTLSCDMEVDENGDVVHHEI
FQSVIKTTERMTYSDVNSILDGDEKVREKYEPLVPMFEKMAELAQVLRNKRMNRGAIDFD
FKEAKVLVDKEGKPYDVELRERGAAERLIEEFMLLANETVAEHFHWMKVPFIYRIHEDPN
EGKLQRFLEFITNFGYSVKGTGNEIHPRALQQILEEVKGQPEEMVVSTVMLRSMKQAKYD
PESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKTGEDTKQKWAEKLPVIAEQ
ASNMERRAVEAERETDDLKKSEYMLDKIGEEYDGIISSVTNFGMFIELPNTIEGLVHVSY
MTDDYYRYDERTYAMIGERTANVYRIGDEITVRVVNVNKDERAIDFEIVGMKGTRRRPVK
DAPKSISAGQGRKKTTKERGSGPRERSGSAEDGWSTRGPKKKKKKTFDNAPKAKRKKKKR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccaggatatacaaaaacacgttgaccgcctgctttcatttatgcgggatgaagca
tacaaaccgcttacaatccaggagcttgaggatgcatttggagtaggggaagcggatgtt
ttcagagattttgtcaaagctcttgtccatatggaagagcagggccttgtagtccgtaca
agaagcaatcggtacggtctgcctgaaaagatgaacctagtgaaggccaaattgtcagga
catgcgaaggggtttgcctttgccgtaacggaagacccggcagatgatgatattttcatc
ccgccgaatgaacttggaaatgcgatgcacggcgatacggtgcttgtgcgcgtgagctcc
aattcatcaggcgccagaaaagaaggtacaattatccgtattttagaccgcggaatgaaa
gaggtcgttgggacctatacggagagcagaaattttggttttgtgattgcggatgataaa
aagattgctaacgatatttttattccaagagatgcttcaaacggagctgtagagggccat
aaagtagtcgtcaagattactacgtacccagagggacggatgagtgctgaaggagaagtt
atccaaattctcgggcacaaaaatgatcctggagtcgatattctttccgtcattcataag
cacggacttcctggaggcttctcaccggatgttcttaagcaggcgaatgatgttcccgat
gaaattgatgaagcagactacaagggccgccgagaccttagaaacgaaaccatcgttacg
atagatggtgcagatgcaaaagatttggatgatgcggtaacggtgacgaagcttgaaaac
ggccactacaaattaggtgttcatattgccgatgtcagccattatgtgacagaggattca
ccaattgatgttgaggcgctggatcgcggaacgagtgtttacttagttgaccgggttatt
ccgatgattcctcaccgtctttccaatggactttgctccctgaatccaaaagtagacagg
ctcactctttcatgtgatatggaagtggatgaaaacggtgacgtcgttcatcatgaaatt
ttccaaagtgttattaaaacgacggaacgaatgacatacagcgacgtaaacagcattctt
gatggggacgaaaaggtccgcgaaaagtatgaaccgcttgtgcccatgtttgaaaaaatg
gccgagcttgctcaagtgctaagaaataagcgtatgaatcgcggcgccattgattttgat
tttaaagaggcaaaggttctcgtagataaggaaggaaagccttacgatgtcgagcttcgc
gaacgcggtgctgctgaacgccttattgaagagtttatgcttcttgccaatgaaacggta
gctgagcatttccactggatgaaggtccctttcatataccgtattcatgaggatcccaat
gaaggcaagctgcagcgtttcctggaattcatcacgaattttggctacagtgtgaagggt
accggaaacgaaattcatccgcgcgctcttcagcagattcttgaagaagtgaaggggcag
cctgaagagatggttgtttcaaccgttatgcttcgatcaatgaagcaggcaaagtatgat
cctgagagccttggccacttcggattgtccactgagttttatactcatttcacttcaccg
attcgccgttacccggatttaatcgttcatcgtttaatccgtacgtatttaattgaaggc
aagacgggagaagatacgaagcaaaaatgggcggaaaagcttccggttattgctgagcag
gcttccaatatggaacgcagggctgtagaggctgagcgtgaaaccgatgacctgaaaaaa
tcggaatacatgcttgataaaattggcgaagagtacgatggaattatcagctccgtaaca
aactttggaatgtttatagagctgccgaacaccatcgaaggacttgttcatgtcagctac
atgaccgatgactattaccgctatgatgaacgcacttatgcgatgatcggcgaacgtaca
gccaacgtttatcgcatcggggatgaaataaccgtccgcgtagtaaacgtgaataaagat
gagcgtgccattgacttcgaaattgtcggcatgaaggggacgagaagacgtccagtgaag
gatgctcctaaatccatcagcgccggacagggacgcaaaaaaacaacgaaagaaagaggc
tccggcccccgtgaaagaagcggttcagcagaagatggctggtcaacccggggaccgaag
aagaaaaagaaaaaaacgttcgataatgcgccaaaggcaaagcggaagaaaaagaagcgg
taa
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