Mycolicibacterium sediminis: MSEDJ_01920
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Entry
MSEDJ_01920 CDS
T07629
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSEDJ_01920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msei03019
]
MSEDJ_01920
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_01920
Enzymes [BR:
msei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSEDJ_01920
Messenger RNA biogenesis [BR:
msei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSEDJ_01920
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSEDJ_01920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
DUF8096
Pribosyltran
HEM4
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBY26096
UniProt:
A0A7I7QJK3
LinkDB
All DBs
Position
complement(173948..176029)
Genome browser
AA seq
693 aa
AA seq
DB search
MTATREQAQALLEQLAGPDATLRDDQWTAIEALVVQRRRALVVQRTGWGKSAVYFIAAKL
LRAEGRGPTVIVSPLLALMRNQVQSAARAGVRAATINSSNVTDWNDVHRDVASGDLDVLL
VSPERLNNPDFRDEVLPALARDAGLVVIDEAHCVSDWGHDFRPDYRRIRTLVAELGSDIP
VLATTATANDRVVADVSSQLGVGGGDTLVLRGGLDRESLRLAVVKVGNPAQRAAWLAEHI
TDLPGSGIVYTLTVAQANDVAAMLAERGHAVHAYTGATETSEREQLENDLLANRVKALVA
TSALGMGFDKPDLGFVVHLGAPASPIAYYQQVGRAGRSTDSAEVVLLPGAEDREVWRYFA
SVAFPSEPMVRNVIDALEPERPQSTPALEPLVDLNRTRLEMVLKVLDVDGAVRRVKGGWI
STGQPWSYDEERYRRLEEARQREQQAMLDYLDTDECRMVFLRRQLNDPELIDGERCGRCD
NCTGAHYESTVDESAAEAARERLMRPGVEISPRRQWPSGLAKLGVNLSGKISDGPGPGRA
IGRLTDLGWGARLRAVLDGPDAEAPDDLVRAAVAVLAAWNWETRPTSVMGLDSARHPVLI
ASLVAKLADLGRLTDLGTLRYSVERRPVTAANSAYRVAGLSGSWEPPELPPLDGPVLLVD
DLTDTGWTLTMAARTVRQAGAPEVLPFAIAAVS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccacccgcgaacaggcccaggcgcttctcgagcagctggccggcccggacgcc
accctgcgcgacgaccagtggacggcgatcgaggcgctggtggtccagcggcgtcgcgcc
ctggtggtgcaacggaccgggtggggcaagtcggcggtgtacttcatcgccgccaagctg
ctgcgcgccgagggacgcgggccgacggtcatcgtgtcgccgctgctggcgctcatgcgc
aaccaggtccagtccgccgcacgcgccggcgtgcgtgcggcgacgatcaactcgagcaac
gtcaccgactggaacgacgtgcaccgcgacgtggcgtccggcgatctcgacgtgctgctc
gtcagcccggagcggctgaacaaccccgacttccgtgacgaggtgctgcccgcgctggcc
cgggacgcgggtctggtcgtgatcgacgaggcccactgcgtctccgactgggggcacgac
ttccgccccgactaccggcggatccgcacgctggtcgccgaactgggctcggacataccg
gttctcgcgaccaccgcgaccgccaacgaccgcgtggtggccgacgtcagcagccaactc
ggcgtcggcggcggcgacaccctggtgctgcgcggcggcctggaccgcgagtcgctgcga
ctggccgtcgtcaaggtgggcaacccggcgcagcgtgcggcctggctggccgagcacatc
accgacctgcccgggtcgggcatcgtctacacgctcaccgtggcgcaggccaacgacgtg
gcggccatgctcgccgaacgtgggcacgcggtccacgcctacaccggcgcgaccgagacc
tcggagcgcgagcagctcgagaacgacctgctggccaaccgggtcaaggcgctggtcgcc
acgtcggcgctgggcatggggttcgacaagccggacctcggcttcgtcgtccacctcggc
gcaccggcctcgcccatcgcctactaccagcaggtcggtcgcgcgggccgctcgaccgac
agtgccgaggtggtgctgctgcccggcgccgaggaccgcgaggtgtggcggtacttcgcg
tccgtggcgttcccctcggaacccatggtgcgcaacgtgatcgacgccctcgaacccgag
cgtccgcagtccacgccggcgttggagccgctcgtcgacctgaaccgcacccgcctggag
atggtgctcaaagtgctcgacgtcgacggtgcggtgcgccgcgtcaagggcgggtggatc
agcacgggacagccgtggagctacgacgaggagcggtaccgccgactcgaggaggcccgg
cagcgcgaacagcaggcgatgctcgactacctcgacaccgacgagtgccgcatggtattc
ctgcgccgccagctcaacgatcccgagctcatcgacggcgagcggtgcggccggtgcgac
aactgcaccggcgcccactacgaatcgaccgtcgacgaatcggcggccgaggcggcccgc
gaacggctgatgcggcccggggtggagatctcgccgcgccggcagtggccgtcgggcctg
gcgaaactgggagtaaacctcagcggcaagatctccgacggccctgggccggggcgggcc
atcggccgcctgaccgacctgggctggggcgcccggctgcgcgccgtcctcgacggtccc
gatgccgaggcgcccgacgacctggtccgcgcggccgtcgccgtcctcgcggcgtggaac
tgggagacccggccgacgtcggtgatgggtctggactccgcgcgccaccccgtcctgatc
gcctcgctggtcgccaagctcgccgacctgggccggctcaccgacctcggcacgctgcgg
tactcggtcgaacgccgaccggtgacggcggccaactcggcgtatcgcgttgcgggactg
tccggttcgtgggaaccgccggagctgccgccactggacggcccggtgctgctggtcgac
gacctgaccgacacggggtggacgctgacgatggcggcacgcaccgtgcgtcaggcgggc
gcacccgaggttctgccgttcgccatcgcggcggtcagctga
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