Mycolicibacterium sediminis: MSEDJ_08140
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Entry
MSEDJ_08140 CDS
T07629
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
msei
Mycolicibacterium sediminis
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msei03019
]
MSEDJ_08140 (hrpA)
Enzymes [BR:
msei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MSEDJ_08140 (hrpA)
Messenger RNA biogenesis [BR:
msei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MSEDJ_08140 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
NACHT
nSTAND3
T2SSE
ABC_tran
AAA_16
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BBY26718
UniProt:
A0A7I7QK71
LinkDB
All DBs
Position
complement(817983..821879)
Genome browser
AA seq
1298 aa
AA seq
DB search
MSESSASVRELRSRLDGLTLRDAARLGRRLRGATPEQARRLGEQITAAEAVIAKRTAAIP
TITYPDLPVSERRDDIAAAIRDNQVVVVAGETGSGKTTQLPKICLELGRGVRGTIGHTQP
RRLAARTVAQRIADELGTDLGDVIGYTVRFTDQASDRTLVKLMTDGILLAEMQRDRRLLA
YDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPGRFAAHFGGAPIVEVS
GRTYPVEIRYRPLEVETSADVDEDDPDGDDVRTEVRDQTEAVVDAVRELEAELPGDVLVF
LSGEREIRDTAEALRDAFKGDRRSTEILPLYARLPTADQQKVFSPSHSGRRVVLATNVAE
TSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPGVCIRLY
SEDDFDSRPRFTDPEILRTNLAAVILQMAALGLGDVEAFPFLDPPEARSIRDGVTLLQEL
GAFDRQGAITDVGRRLARLPLDPRIGRMILQADDEGCVREVLVLAAALSIPDPRERPIDR
EEAAKQKHARFADEHSDFVSFLNLWNYLSEQRRERSGSSFRRMCREEFLHYLRIREWQDL
TGQLRSIARDLGIREQDEPADPARVHAALVAGLLSHVGLREGDGREYAGARNSRFVLAPG
SVLTRRPPRWIMVADLVETSRLFGRVAARVEPEAVERVAGDLVQRTFSEPHWDAKRGAVM
AFERVTLYGLPLVPRRKVGYAQVDPVASRELFIRHALVEGDWQTRHHFFRDNATLLADLA
EVEERSRRRDLLVGDDEVYALYDARVPADVVSARHFDAWWKKQRHRTPDLLTFTRDDLLR
KDEAVDQPDAWQTGDLELPITYRFEPGAEDDGITVHVPVEVLARLGGDEFAWHVPALREE
LITALIKSLPKEFRRSFVPAPDTARAILPTLNPGAEPLLDALQRELRRRSGILVPIDAFD
LTKVPPHLRVTFAVQAPDGSEVGRGKDLEGLKERLATPIQKAVADAVSGSLARRGMRSWP
DDLDEIPRVIENTAAGHAVRGYPALVDVGSAVDLDVFASPAEQQARMGPGLRRLLRLEIT
SPVKAVERALDPRTRLLVGANPDGSLAALIEDCADAVVDTMVTAPVWTRGEFTALRTQVA
ARLVPTTLDLVGRVQKVLAAAQEARLALPDSPPAAQAESIADVRAQLARLMPSGFVTATG
ATRLADLQRYLTAIARRLELLPRAVGADAEKMDRVHAVEDALDALVRSLTPSRAASADVR
EIGRQIEELRVSLWAQQLGTPRPVSEQRIYRAIDAVVQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgaatcgtccgcgagcgttcgcgagctgcgcagccgcctcgacgggctgaccctc
cgcgacgccgcccggctgggccgcagactgcgcggtgccacgcccgagcaggcccggaga
ctcggcgagcagatcaccgcggcggaggccgtgatcgccaagcgcacggccgcgatcccg
acgatcacctaccccgacctgccggtcagcgagcgccgcgacgacatcgccgccgcgatc
cgcgacaaccaggtggtcgtggtcgccggtgagaccggttccggcaagaccacccagctg
cccaagatctgtctcgaactgggccgtggggtgcggggcacgatcgggcacacccagccg
cggcggctcgcggcgaggaccgtggcccagcgcatcgccgacgaactcggcaccgacctc
ggcgacgtcatcggctacaccgtgcggttcaccgatcaggcgagcgaccggacgctggtc
aagctgatgaccgacggcatcctgctcgccgagatgcagcgcgaccgacggttgctcgcc
tacgacacgctgatcctcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctc
ggctacctccgcgagctgctgccgcgccggcccgacctcaaggtgatcgtcacctcggcg
acgatcgagccgggccgcttcgccgcgcacttcggcggtgcgccgatcgtcgaggtctcg
gggcgcacctacccggtcgagatccgttaccgcccactggaggtggagacgtcggcggac
gtcgacgaggacgaccccgacggtgacgacgtccgcaccgaggtgcgggatcagaccgag
gcggtggtcgacgcggtgcgggagctggaggcggagctgcccggcgacgtactggtgttc
ctgtccggcgaacgcgagatccgcgacaccgccgaggcgcttcgcgacgccttcaagggg
gaccgccgctcgaccgagatcctcccgctctacgcccggctgccgaccgcggatcagcag
aaggtgttctcgccgagccactccgggcggcgcgtcgtcctggccaccaacgtcgcggag
acgtcgctgaccgtgccgggcatccgctacgtcgtcgacccggggaccgctcgcatctcg
cgctacagccgccgcaccaaggtgcagcggctgccgatcgagccgatctcgcaggcctcg
gccgcgcagcgtgcgggccggtcgggccgcaccgcgcccggcgtgtgcatccggctgtac
tcggaggacgacttcgactcccggccccggttcaccgatccggagatcctgcgcaccaac
ctcgcggccgtcatcctgcagatggcggcgctggggctcggcgacgtcgaggcgttcccg
ttcctcgacccgccggaggcgcgcagcatccgcgacggcgtgacgctgctgcaggaactc
ggcgccttcgaccggcagggcgcaatcaccgacgtcggccgtcggctggcgcgactgccg
ctcgatccacgcatcgggcggatgatcctgcaggccgacgacgagggctgcgtccgcgag
gtcctggtgctcgcggcggcgctgtcgatcccggatccgcgggaacggcccatcgatcgc
gaggaggccgccaagcagaagcacgcacggttcgccgacgagcactccgacttcgtgtcg
ttcctcaacctgtggaactacctgtccgagcagcggcgagaacggtccggcagctcgttc
cgccggatgtgccgcgaggagttcctgcactacctgcgcatccgcgagtggcaggatctc
accggccagttgcgcagcattgcaagggatctcggcatccgcgagcaggacgagcccgcc
gacccggcgcgggtgcacgcggccctggtcgccggcctgctgtcccacgtcggcctacgg
gagggcgacggccgcgagtacgcgggcgcacggaactcccgcttcgtcctggcgccggga
tcggtgctcacccgaaggccgccgcgctggatcatggtggccgacctcgtcgagaccagc
cggctgttcggccgggtcgccgcacgcgtcgaacccgaggcggtcgagcgcgtcgcgggt
gacctggtgcagcgcacgttcagcgagccgcactgggacgcgaagcgcggcgcggtgatg
gcattcgagcgcgtgaccctctacgggctgccgctggtaccccggcggaaggtcgggtac
gcccaggtcgacccggtcgcgtcgcgcgagctgttcatccggcacgccctggtcgagggg
gactggcagacccgccaccacttcttccgcgacaacgcgacgctgctcgccgatctcgcg
gaggtcgaggagcggtcgcgccggcgcgacctgctggtgggcgacgacgaggtgtacgcg
ctgtacgacgctcgcgtgcccgcggacgtggtgtcggccagacacttcgacgcctggtgg
aagaagcagcgccaccgcaccccggaccttctgacgttcacgcgcgacgatctactgcgc
aaggacgaggccgtcgaccagcccgacgcgtggcagaccggcgacctggagctgcccatc
acctaccggttcgaaccgggcgccgaggacgacggcatcaccgtgcacgtgccggtcgag
gtgctggcccggctcggcggtgacgagttcgcctggcacgtcccggcactgcgggaggaa
ctgatcaccgcgctgatcaagtcgctgcccaaggagttccggcgcagcttcgtccccgca
ccggataccgcccgggcgatcctgccgacgctgaacccgggcgccgagccgctcctcgat
gccctgcagcgcgaactccgcaggcgcagcggcattctggtgccgatcgacgcgttcgac
ctgacgaaggtgccaccgcacctgcgcgtcacgttcgcggtccaggcgcccgacggctcg
gaggtgggccgcggcaaggacctggagggtctgaaggaacggctcgcgacgccgattcag
aaggccgtcgccgacgcggtgtcggggagcctggcgcgacgcgggatgcgttcgtggccc
gacgatctcgacgagatcccgcgcgtcatcgagaacaccgccgccggccatgccgtgcgg
ggctatcccgctctcgtcgacgtcgggtcggccgtcgacctcgacgtcttcgcctcgccg
gccgaacagcaggcgcggatggggccgggcctccgccggctgctccgcctcgagatcacc
tcgccggtcaaggcggtcgagcgcgcactcgacccgcgcacccgtctgctcgtcggcgcg
aacccggacggctcgctggccgcgctgatcgaggactgcgccgacgccgtcgtcgacacg
atggtcaccgcgccggtgtggacgcgtggtgagttcaccgcactgcgcacgcaggtcgcc
gcccgtctggtgccgaccacgctcgacctcgtcggccgcgtccagaaggtgctggccgca
gcacaggaggcccggctcgcgctgcccgactcgccgccggccgcgcaggccgagtcgatc
gccgacgtccgcgcgcagctggcccggctcatgccgtcggggttcgtgaccgccaccggc
gcaacgcgtctcgccgatctccagcgctacctcaccgccatcgcccgcaggctcgaactg
ctaccccgggccgtgggtgccgacgccgagaagatggaccgcgtgcacgccgtggaggac
gcgctcgatgcgctggtgcggtcgctgaccccgtcgcgtgcggcgtcggccgacgtccgc
gagatcggcaggcagatcgaggagctgcgggtgagcctgtgggcgcagcagctcggcacg
ccgcgcccggtcagcgagcagcgcatctaccgggccatcgacgccgtggtgcagtag
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