Mycolicibacterium sediminis: MSEDJ_22960
Help
Entry
MSEDJ_22960 CDS
T07629
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MSEDJ_22960 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_22960 (recD)
Enzymes [BR:
msei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MSEDJ_22960 (recD)
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MSEDJ_22960 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
RecD_N
AAA_22
SH3_13
PhoH
nSTAND3
AAA_16
AAA_28
TraI_hel_assoc_N
SLFN-g3_helicase
DUF3322
AAA_29
NTPase_1
T2SSE
AAA_23
AAA_5
ATPase
NACHT
AAA_17
TrwB_AAD_bind
SRP54
DEAD
AAA_24
CbiA
Motif
Other DBs
NCBI-ProteinID:
BBY28200
UniProt:
A0A7I7QQ34
LinkDB
All DBs
Position
complement(2356453..2358183)
Genome browser
AA seq
576 aa
AA seq
DB search
MTVVDEAHWRRAAGAAGLLREFNDAGVLDASDVLVAQRVTALAGEADERVALAAALTVRA
LRGGSVCLELAGVAEQVDLPELPWPDVDGWLTAVRASPLVDTPPHVLRLRGDAIYLDRYW
REEQQVAEDLLAIVSADPTTASATDVERLFPPGYAEQRAAAELALRQRLTVITGGPGTGK
TTTVARLLALLAGDAHAKGSPPLRIALAAPTGKAAARLQEAVRAEIAQLDLVDQRRIAGL
QATTMHRLLGSRPDNSSRFRHHRGNRLPHDVVVVDETSMVSLTMMARLLEAVRPEARLLL
VGDPDQLASVDAGAVLADLVDGLGARVDVRIAELKTPHRFGAAIGALALAIRDGDADAAI
DVLREGGEHVEWIDAEDPGPALRAVLLPSAMDLRRAAILRDGKAALATLDEHRLLCAHRR
GPHGVAHWNRQVERWLTDATGEPIWAAWYAGRPILVTANDYGLGIYNGDVGVTLIDDAGL
RAVVAGSAAPVEFAISRLADVETMHAMTIHKSQGSQAREVTVLMPPVDSRLLTRELFYTA
VTRAKEKVRVVGSADEVREAISRRAVRATGLASRLR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtcgtcgacgaggcgcactggcggcgtgcggccggcgcggccggtctgctgcgc
gagttcaacgacgccggcgtgctcgacgcctccgacgtcctcgtcgcgcagcgcgtgacc
gctctcgccggcgaggccgatgagcgggtggcgctggcagcggcactgaccgtgcgcgca
ttgcgcggcgggtcggtgtgcctggaattggccggtgtcgccgagcaggtcgaccttccc
gagctgccctggcccgacgtcgacggatggttgaccgccgtgcgtgcgagccctctcgtc
gacacccctccgcacgtgctgcggctgcgcggtgacgccatctacctcgaccgctactgg
cgtgaggagcagcaggtggccgaggacctgctggccattgtgtccgccgatccgacgacg
gcgtccgccaccgacgtcgagcggctgttcccgcccggctacgccgaacagcgcgccgcc
gccgaactggctctgcggcaacgactcacggtcatcacgggcgggccgggcaccggcaag
acgacgacggtggcgcggctgctggccctgctggccggcgacgcgcacgccaagggttcc
ccgccgctgcgcattgcgctggccgcaccgaccggcaaggccgccgcccgcctgcaggag
gcggtccgtgccgagatcgcccagctcgacctcgtcgaccagcggcgcatcgcgggactg
caggccaccacgatgcaccggctgctcggcagcaggccggacaactcgtcgcggttccgc
caccaccgcggcaaccgcctgccgcacgacgtggtggtggtcgacgagacctcgatggtg
tcgttgacgatgatggcgcggctgctcgaggcggtgcggccggaggcgcggctgctgctg
gtgggcgaccccgaccagctcgcgtcggtggatgcgggtgcggtgctcgccgacctcgtc
gacgggctcggcgcgcgcgtcgacgtgcgcatcgcggagttgaagacgccacaccggttc
ggtgcggcgatcggcgcgctggccctggcgatccgggacggcgacgcggacgcggcgatc
gacgtgctgcgcgagggcggtgaacacgtcgagtggatcgacgcggaggacccgggcccg
gccctgcgcgcggtgttgctcccttccgcaatggatctgcgccgcgcggcgatcctccgc
gacggcaaggcggcactcgccacgctcgacgagcaccgcctgctgtgcgcgcaccggcgc
ggcccgcacggggtggcgcactggaaccggcaggtcgagcggtggctgacggatgcgacc
ggtgagccgatctgggcggcctggtacgccggccggccgatcctcgtcaccgcgaacgac
tacgggctggggatctacaacggcgacgtcggggtgacgctgatcgacgacgccgggctc
cgggccgtggtcgcaggcagcgcggcgccggtcgagttcgcgatcagccggttggccgac
gtcgagacgatgcacgcgatgaccatccacaagagccagggcagccaggcccgggaggtg
acggtgctgatgccgccggtcgactcgcggctgctgacccgggagttgttctacacggcg
gtgacccgggcgaaggagaaggtccgggtggtggggtcggccgacgaggtgcgcgaggcc
atttcgcgccgggccgtgcgcgccaccgggctagcatcgaggttgagatga
DBGET
integrated database retrieval system
