Mycolicibacterium sediminis: MSEDJ_23430
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Entry
MSEDJ_23430 CDS
T07629
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSEDJ_23430 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msei03021
]
MSEDJ_23430 (rpoB)
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_23430 (rpoB)
Enzymes [BR:
msei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSEDJ_23430 (rpoB)
Transcription machinery [BR:
msei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSEDJ_23430 (rpoB)
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSEDJ_23430 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BBY28247
UniProt:
A0A7I7QQL7
LinkDB
All DBs
Position
2412746..2416240
Genome browser
AA seq
1164 aa
AA seq
DB search
MASRQINSVGTNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSEGWRAKAIERG
EPNPKGGLEEVLEELSPIEDFAGNLSLTFSDPRFDEVKASVDDCKEKDQTYAAPLFVTAE
FMNSESGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDKSKDKATEND
LTSVKVIPGRGAWLEFDVDKRATVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIM
MSTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNK
KLGLNPGVPITSSTLTPEDIAATIEYLVRLHEVNSEQAAYMTAPGGVEVPVEVDDIDHFG
NRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIETPEGPNI
GLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEILHLTADEEDRYVVAQANSPIDDTGRF
TEERILVRRKGGEVENVTPAEVDFMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ
AVPLVRSEAPLVGTGMELRAAIDAGDVVVSSKSGVVEEVSADYITVMADDGSRHTYRMRK
FARSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDA
IILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIGA
EVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFS
REDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPIEDMPFMPDGTPVD
IILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAQGTPEWAKNLPENLLTSEPDSIVST
PVFDGAREGELEGLLGSTLPNRDGDVMVNAEGKSELFDGRSGEPFPYPVTVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSD
DTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSEGTAIEMRDTDDED
LERAAANLGINLSRNESPSVEDLA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
ttggcttctcgccagatcaattcagtaggtaccaactccgttcccggagcacccaaccga
gtctccttcgcgaagctccgcgagcctctcgaggttccggggcttctcgacgttcagact
gactcgttcgagtggctcatcggatccgagggttggcgggcgaaggccatcgagcgtggc
gagcccaaccccaagggcggactcgaagaggttctcgaagagctgtccccgatcgaggac
ttcgccgggaacctgtcgctcaccttctccgacccgcgcttcgacgaggtcaaggcctcc
gtcgacgactgcaaggagaaggaccagacctacgcggcacccctgttcgtcaccgctgag
ttcatgaacagcgagagcggcgagatcaagagccagacggtcttcatgggtgacttcccg
atgatgaccgagaagggcaccttcatcatcaacggcaccgagcgtgtcgtggtgagccag
ctggtccgttcgccgggcgtgtacttcgacaagtcgaaggacaaggccaccgagaacgac
ctcaccagcgtgaaggtcatccccggccgtggcgcatggctcgagttcgacgtcgacaag
cgcgccaccgtcggcgtccgcatcgaccgcaagcgtcgccagccggtcaccgtgctgctg
aaggcgctcggctggaccagcgagcagatcaccgagcgcttcggcttctccgagatcatg
atgtccaccctcgagaaggacagcaccgccggtcccgacgaggcactgctggacatctac
cggaagctgcgcccgggcgagccgccgaccaaggagtccgcgcagaccctgctggagaac
ctgttcttcaaggagaagcgctacgacctcgcccgcgtcggccgctacaaggtcaacaag
aagctcggtctgaaccccggcgtcccgatcaccagctccacgctgacgcccgaggacatc
gccgccacgatcgagtacctggtccgtctgcacgaggtcaactccgagcaggccgcctac
atgaccgcccccggcggcgtggaggtcccggtcgaggtggacgacatcgaccacttcggc
aaccgtcgtctgcgcaccgtgggcgagctcatccagaaccagatccgcgtgggcctgtcc
cgcatggagcgcgtggttcgcgagcgcatgaccacccaggacgtcgaggcgatcaccccg
cagaccctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttcgggacgtcg
cagctgagccagttcatggaccagaacaacccgctgtcgggtctgacccacaagcgccgc
ctgtcggcgctgggccccggtggtctgtcccgtgagcgcgccggcctcgaggttcgtgac
gtgcactcgagccactacggccgcatgtgcccgatcgagacgccggaaggcccgaacatc
ggcctgatcggctcgctgtcggtctacgcgcgggtcaacccgttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggtgtcgtcaccgacgagatcctgcacctcaccgccgac
gaggaggaccgctacgtcgtagcgcaggccaactcgccgatcgacgacacgggtcgcttc
accgaggagcgcatcctggtccgtcgtaagggcggcgaggtcgagaacgtcacgccggcc
gaggtcgacttcatggacgtctcaccgcgccagatggtgtcggtcgcgaccgcgatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctgatgggtgccaacatgcagcgccag
gcggttccgctggtgcgcagcgaggcaccgctcgtcggcaccggcatggaactgcgtgcc
gcgatcgacgccggtgacgttgtcgtctccagcaagtccggtgtggtggaagaggtttcg
gccgactacatcaccgtgatggccgacgatggcagccggcacacctaccggatgcgcaag
ttcgcccgctccaaccacggcacgtgcgccaaccagcgcccgatcgtggacgccgggcag
cgcgtcgagtccggccaggtgctggccgacggtccctgcaccgagaacggcgagatggcg
ctgggcaagaacctgctcgtcgcgatcatgccgtgggagggccacaactacgaggacgcg
atcatcctctcgcagcgcctggtggaggaggacgtgctcacgtccatccacatcgaggag
cacgagatcgatgcccgcgacaccaagttgggcgccgaggagatcacccgggacatcccg
aacgtctccgacgaggtgctggccgatctcgacgagcgcggcatcatccgcatcggcgcc
gaggtccgtgacggcgacatcctggtcggcaaggtcacgcccaagggcgagacggagctg
acccccgaggagcgcctgctgcgcgccatcttcggcgagaaggcgcgcgaagtgcgcgac
acctcgctgaaggttccgcacggcgagtccggcaaggtcatcggcgtccgcgtgttctca
cgcgaggacgacgacgagctgcccgccggcgtcaacgagctggtccgcgtttacgtggcc
cagaagcgcaagatctccgacggcgacaagctcgccggacgccacggcaacaagggcgtc
atcggcaagatcctgccgatcgaggacatgccgttcatgccggacggcacgccggtcgac
atcatcctgaacacgcacggtgtgccgcgacggatgaacatcggccagatcctcgagacg
cacctcggttgggtggccaaggccggctggaacatcgacgtcgcacagggaactccggag
tgggccaagaacctgcccgagaacctcctgacgtcggagccggacagcatcgtctccacg
cccgtgttcgacggtgcgcgcgagggtgagctggagggcctgctgggctcgacgctgccc
aaccgcgacggcgacgtcatggtcaacgccgagggcaagtcggagctgttcgacggacgc
agtggtgaaccgttcccgtacccggtgacggtcggctacatgtacatcctgaagctgcac
cacttggtcgacgacaagatccacgcccgctccaccggtccgtactcgatgatcacgcag
cagccgctgggtggtaaggcgcagttcggtggtcagcgattcggtgagatggagtgctgg
gccatgcaggcctacggcgcggcgtacacgctgcaggagctcttgacgatcaagtccgac
gacaccgtcggtcgcgtcaaggtctacgaggcgatcgtcaagggcgagaacatccccgag
ccgggcatccccgagtcgttcaaggtgctgctcaaggagctgcagtcgctctgcctcaac
gtcgaggtgctctccagcgagggcactgcgatcgagatgcgcgacaccgacgacgaggac
ctggaacgcgctgccgcgaacctgggaatcaacctgtctcgcaacgagtcaccgtcggtc
gaggaccttgcttaa
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