Mycolicibacterium sediminis: MSEDJ_23440
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Entry
MSEDJ_23440 CDS
T07629
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSEDJ_23440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msei03021
]
MSEDJ_23440 (rpoC)
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_23440 (rpoC)
Enzymes [BR:
msei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSEDJ_23440 (rpoC)
Transcription machinery [BR:
msei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSEDJ_23440 (rpoC)
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSEDJ_23440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBY28248
UniProt:
A0A7I7QPD3
LinkDB
All DBs
Position
2416304..2420263
Genome browser
AA seq
1319 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDTEMRHNELSTLEAEMVVEKKAVEDQRDLDLAERSQKLEND
LAELEKEGAKSDVRRKVRDSGEREMRQLRDRTQRELDRLDEIWTTFTKLAVKQLIVDEVL
YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQMNANSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTEIPGDKGEYK
PAAKDQPEEGVFSSAAEAQMAVDLGTLSVRAKIKVRLTHLRPPAAREAELFGDAGWKFGD
AWMAHTTLGRVLFNELLPRGYAFVDEQMHKKVQARIINDLAERYPMIVVAQTVDKLKDAG
FHWATRSGVTVSMADVLVPPEKENILERHEQEAERIEKQYQRGGLNKDERNGELVKIWQR
ATEEVGKALEEYYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCDTERGIAVT
LAEVDTTTGALIRDPHVETAAFARTLASDAVDANGNVVVQRGHDLGDPAIDELLAAGISQ
VRVRSVLTCASPSGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG
VTGGADIVGGLPRVQELFEARVPRNTAPIADLSGRVRLEESEKFYKITIVPDDGSEEVVY
DKISRRQRLKSFKHDDGEERLLSDNDHVVVGQQLMEGSANPHEVLRVQGQRSVQQHLVNE
VQDVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFESANRRVVAEG
GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLLGLKENVIIGKL
IPAGTGINRYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGQSSGQAVPLDDYGFSDYR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgtgagcgctgcggcgtc
gaggtgactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcaccc
gtcacgcacatctggtacttcaagggcgttccgtcgcgtctgggctacctgctcgacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtcatcgtcggcgtcgac
accgagatgcggcacaacgagctgtcgaccctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggaccagcgtgatctggacctcgccgagcgttcgcagaagctcgagaacgac
ctcgcggagctggagaaggagggcgccaagtccgacgtccgccgcaaggtccgtgacagt
ggcgagcgcgagatgcgtcaactgcgcgaccgcactcagcgcgagctggaccggctcgac
gagatctggacgacgttcaccaagctggccgtcaagcagctcatcgtcgacgaggtgctc
taccgcgagctgcaggatcgctacggcgagtacttcaccggcgccatgggtgcggagtcg
atcaagaagctcatcgagaacttcgacatcgacgccgaggcggagtcgctgcgcgacacc
atcaagaacggcaagggccagaagaagcttcgcgccctcaagcgtctgaaggtcgtcgcc
gcgttccagatgaacgccaactccccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggagctgcgcccgatggtccagctggacggtggccgcttcgcgacctccgatctc
aacgacctgtaccgccgcgtcatcaaccggaacaaccgtctcaagaggctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtcgacgca
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgcccgctcaag
tcgctgtccgatctgctgaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatttccgagcacccggtgctgctgaaccgc
gcaccaacgctgcaccgtctgggcatccaggccttcgagccgcagctggtggagggcaag
gccatccagctgcacccgctggtctgtgaggcgttcaacgccgacttcgacggcgaccag
atggccgtgcaccttccgctgtcggcggaggcgcaggccgaggcacgcatcctgatgctg
tcctcgaacaacatcctgtcgccggcgtcgggcaagcccctcgccatgccgcgtctggac
atggtgaccggtctgtacttcctcaccaccgagatccccggcgacaagggcgaatacaag
cccgccgccaaggatcagccggaggagggcgtcttcagctcggccgccgaggcacagatg
gccgtcgatctcggcacgctgtccgtgcgcgcgaagatcaaggtgcgtctgacccacctg
cgtccgccggccgcacgcgaagccgagctgttcggcgacgcgggctggaagttcggcgat
gcgtggatggctcacaccaccctcggtcgcgtgctgttcaacgagctgctgccccgcggg
tacgcgttcgtcgacgagcagatgcacaagaaggtccaggcccggatcatcaacgacctg
gccgagcgctacccgatgatcgtcgtggcgcagaccgtcgacaagctcaaggacgccggc
ttccactgggccacgcgttcgggtgtcaccgtgtcgatggcggacgttctggtgccgccg
gagaaggagaacatcctcgagcggcacgagcaggaagccgaacggatcgagaagcagtac
cagcgcggtggtctgaacaaggacgagcgcaacggcgaactggtgaagatttggcagcgg
gccaccgaagaggtcggcaaggccctggaggagtactaccccgaggacaacccgatcatc
acgatcgtgaagtccggcgccacgggcaacctgacccagacccgcacgctcgcgggcatg
aagggtctggtcaccaaccccaagggtgagttcatcccgcgtccgatcaagtcctcgttc
cgcgagggcctgacggttctggagtacttcatcaacacgcacggtgcccgtaagggtctg
gccgacaccgcacttcgtacggcggactcgggttacctgacccgtcgtctggtggacgtc
agccaggacgtcatcgtccgcgaggacgactgcgacaccgagcgcggcatcgccgtcacg
ctcgccgaggtggacaccacgaccggcgccctcattcgggatccgcacgtggagaccgcg
gcgttcgcccgcacgttggccagcgatgcggtcgacgcgaacggcaacgtcgtcgtccag
cgtggacacgacctcggcgatccggcgatcgacgaactgctggcggcgggcatctcgcag
gtgcgggtgcgctcggtgctgacgtgtgcaagccccagtggcgtgtgcgcgatgtgctac
ggacgttcgatggcgaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgcc
gcacagtccatcggtgagcccggcacgcagctgacgatgcgtaccttccaccagggtggc
gtcacgggtggtgccgacatcgtcggtggtctgccccgcgtccaggaactgttcgaggcc
cgcgtgccgcgcaacactgcgccgatcgcggacctgtccggacgggtccgcctggaggag
agcgagaagttctacaagatcacgatcgtgccggacgacggtagcgaagaagtggtctac
gacaagatctctcgtcgccagcgcctgaagtcgttcaagcacgacgacggcgaggagcgt
ctgctctccgacaacgatcacgtcgtggtcggccagcagctcatggagggctcggccaac
ccgcacgaggttctgcgcgtgcagggtcagcggagcgtccagcagcacctcgtcaacgag
gtgcaggacgtctaccgtgcccagggcgtgtcgatccacgacaagcacatcgaggtcatc
gttcggcagatgctgcgtcgcgtcacgatcatcgattcgggttcgacggagttcctaccc
ggctcgctgaccgagcgtgcggagttcgagtccgccaaccgtcgcgtcgtcgcggagggt
ggcgaacccgccgccggccgtccggtgctgatgggcatcacgaaggcgtcgctcgcgacc
gattcgtggctgtcggcggcgtcgttccaggagaccacgcgtgtcttgaccgatgcggcg
atcaactgccgcagcgacaagctgctgggtctgaaggagaacgtgatcatcggcaagctg
atcccggccggtaccggcatcaaccggtaccgcgacatccaggtgcagcccaccgaggaa
gcccgcgctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttc
ggccagagttctggtcaggccgtgccgctggacgactacggattcagcgactaccgctag
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