Mycolicibacterium sediminis: MSEDJ_28120
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Entry
MSEDJ_28120 CDS
T07629
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03420
Nucleotide excision repair
msei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSEDJ_28120
03430 Mismatch repair
MSEDJ_28120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_28120
Enzymes [BR:
msei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSEDJ_28120
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSEDJ_28120
MMR (mismatch excision repair)
Other MMR factors
MSEDJ_28120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BBY28716
UniProt:
A0A7I7QSA3
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All DBs
Position
2889029..2892289
Genome browser
AA seq
1086 aa
AA seq
DB search
MTTPPRFSPAELAEALGVFAPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVAN
GYATPGQVLGLTFTRKAAGQLLRRVRTRLARLAGVGLGPGGDENATIGTYHAFAGTLLRE
HGLLLPVEPTTRLISETELWQLAFQVVCDHPGPLETERTPAAITDMVLRLSGQLAEHLVD
TDQLRDTHLELERLVLTLPPGPRQRDTGPNQSLRKMIASQAERADLIPLIDALHARMRAE
NVMDFGMQMSAAARLAAAFPKVGAELRSRYRVVLLDEYQDTGHAQRVALSALFGGGVDDG
LALTAVGDPIQSIYGWRGASATNLPRFTTDFPYADGTPAPTLELRTSWRNPPSALHLANA
VSAEARRRSVEVRELLPRPDAAPGTIRCALHPDVTVEREWVADQVAQRYHAARAAGDEIP
TAAVLVRRNADAVPMADALTGRGVPVEVVGLAGLLAIPEVADVVAMLRLAADPASGAAAV
RVLTGPRWRLGAADLTALWRRARDLDGQDRGGDRGSLRAIAASAAPDADAACLADAISDP
GPPARYSAEGARRIAALSRELTALRAQLHHPLPELIAEVRRTMGVDAEVRAAQPVSAGWT
GAEHLDAFADVVADFAVRPAGTVGALLAYLDAAEDRENGLAPADVVVSRDRVQILTVHAA
KGLEWQVVAVPHLSGRVFPSTAMARTWLSDAGDLPPLLRGDRATLSEHGVPVLDTSDVND
RKALSDKIDQHKRTLDQRRRDEERRLLYVALTRAEDTLLLSGHHWGATESKSRGPSEFLL
EIKDVIDRAEADGRPCGAVGPWAPEPADGDPNPLRDEVVARQWPVARVGAAAIDLGAELV
ARALAGDVAPAGEPVPDGEFAEDVAGWEVEVDALLAEREKSAHRPPLALPSHLSVSALVD
VGRDPAGAARRLQRRLPSRPDPHALLGTAFHDWVQRFFHAERLFDLEDLPGAVDGELGLA
EAEKLAELQAAFAVSTWASRTPVDVEVPFDMVLGGTVVRGRIDAVFADDDGGFTVVDWKT
GDPPGAEEDLRHNAVQLAVYRLAWAATQGVEPSSVRAAFHFVRSGETVTPSDLPGADDLA
SLLYVP
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacgccgccgcgcttcagccccgccgagctggccgaggcgctgggcgtattcgcc
cccaccgacgagcaggccgcggtcatcgcggcgccaccgggtccactcgtcgtcatcgcg
ggtgcgggtgcgggcaagaccgagaccatggccgcgcgggtggtgtggctggtcgccaac
ggttatgcgacgcccgggcaggtgctgggcctgacgttcacgcgcaaggccgccggtcag
ctgctgcgccgcgtccggaccaggttggcccggctggccggggtcggcctgggccccggg
ggcgacgagaacgccaccatcggcacctatcacgccttcgcgggaacgctgctgcgcgag
cacggcctgctcctgccggtcgagcccaccacccggctgatcagcgagaccgagctgtgg
cagctggccttccaggtggtgtgcgaccatccgggtccgctcgagacggagaggacgcct
gcagcgatcacggacatggtcctgcggctgtcgggtcagctcgccgagcacctcgtcgac
accgatcagctccgcgacacccacctcgagctggagcggctggtgctgacgctgccgccc
ggcccacggcagcgcgacaccgggcccaaccagtcgctgcgcaagatgatcgcgtcgcag
gccgaacgtgccgacctcatcccgctgatcgacgcgctgcacgctcggatgcgtgcggag
aacgtcatggacttcgggatgcagatgtcggcggcggcccggctcgccgcggccttcccg
aaggtgggcgcggagttgaggtctcgctaccgcgtcgtgctgctcgacgagtaccaggac
accggccacgcccagcgcgtcgcgctgtccgcgctgttcggcggtggcgtcgacgacggg
ctggcactgaccgccgtcggcgatcccatccagtcgatctacggctggcgcggtgcgtcg
gccacgaacctgccgcggttcaccacggacttcccgtacgccgacggcacacccgcaccc
accctcgagttgcggaccagttggcgcaatccaccgagcgccctgcacctcgccaacgcg
gtctcggcggaggcgcgccgacggtcggtcgaggtgcgcgaactgctgcccaggcccgac
gccgcgcccgggaccatccgttgcgcgctgcacccggacgtcaccgtcgaacgcgagtgg
gtggccgaccaggtggcgcagcggtatcacgccgcgcgagcggcgggcgacgagatcccc
acggcggcggtgctggtgcggcgcaacgccgacgcggtgccgatggccgacgcgctgacc
ggtcgcggcgtgccggtggaggtcgtcggactggccggtctgctggccattcccgaggtg
gccgacgtggtcgcgatgctgcggttggccgccgatccggcctcgggtgcggcggcggtg
cgcgtgctgaccggcccgcgctggcgactgggggcggccgacctcaccgcgctgtggcgg
cgggcccgcgatctcgacgggcaggaccgcggcggcgaccgcggctccctgcgggcgatc
gcggcatcggcggctcccgacgcggatgccgcctgcctcgccgacgccatctccgacccc
ggccctcccgctcggtactccgccgagggcgcgcgtcgcatcgccgcgctcagccgcgag
ctgaccgcgctgcgcgcacagttgcaccatcccctgcccgagctgatcgccgaggtccgc
cggacgatgggcgtcgacgcggaggttcgtgcggcgcaacccgtctcggcgggatggacc
ggagcggagcacctcgacgcgttcgccgacgtggtcgccgacttcgcggtgcgccccgcc
ggtaccgtcggcgccctgctggcctacctggacgcggccgaggaccgggagaacggtctc
gcgcccgccgacgtcgtggtgtcccgcgaccgcgtgcagatcctcaccgtgcacgccgcc
aagggtctcgagtggcaggtcgtcgcggtgccgcacctgtccggtcgcgtgttcccgtcg
accgcgatggcgcgcacgtggctgagcgacgcgggtgacctgccaccgctgctgcgcggt
gaccgggcaacgctgtccgagcacggcgtgccggtactggacacctccgacgtcaacgac
cgaaaggcgctgtcggacaagatcgatcagcacaagcggacgctggatcagcgccgcagg
gacgaggagcggcggctgctctacgtggcgctcacccgtgccgaggacaccctgctgctg
tccggccaccactggggtgccacggagtccaagtcgcgcgggccctcggaattcctgctc
gagatcaaggacgtgatcgaccgggcggaggccgacggccggccgtgcggcgccgtcgga
ccgtgggcccccgagcccgcggacggggatccgaacccgttgcgcgacgaggtcgtcgca
cgacagtggccggtggcacgggtcggcgccgccgcgatcgacctgggagccgagctggtg
gcccgcgcgctcgcgggcgacgtggccccggccggcgagcccgttcccgacggggaattc
gccgaggacgtcgcggggtgggaggtggaggtcgacgcgctgctcgcggaacgggagaag
tcggcgcaccgcccgccactcgcgctgccctcgcacctgtcggtcagcgcgctggtcgac
gtcgggcgcgaccccgctggcgcggcccggcggctgcagcgccggttgccgtcccgcccg
gatccgcacgcgctgctgggtaccgcgttccacgactgggtgcagcggttcttccacgcg
gagcggctgttcgacctcgaggacctgccgggcgcagtcgacggcgaactgggcctggcc
gaggcggagaaactggcggaactgcaggccgcgttcgcggtgtcgacgtgggcatcgcgc
acccccgtcgacgtcgaggtgccgttcgacatggtgctcggcgggaccgtggtgcgtggc
cgcatcgatgcggtgttcgccgacgacgacggtgggttcaccgtggtcgactggaagacc
ggtgaccccccgggcgctgaggaagatctgcggcacaacgccgttcagctcgcggtgtac
cgattggcgtgggcggcgacgcagggggtggagccgtcgtcggtccgggcggcgttccac
ttcgtgcgcagtggtgagaccgtcacgccctccgacctgccgggcgccgacgacctcgcg
tcgctgctgtacgtgccgtga
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