Mycolicibacterium sediminis: MSEDJ_35860
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Entry
MSEDJ_35860 CDS
T07629
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
msei
Mycolicibacterium sediminis
Pathway
msei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MSEDJ_35860 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msei03021
]
MSEDJ_35860 (rpoD)
Transcription machinery [BR:
msei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MSEDJ_35860 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BBY29490
UniProt:
A0A7I7QU09
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All DBs
Position
complement(3707511..3708908)
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AA seq
465 aa
AA seq
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MKPVAAKAPAKAPAKKAAAKTANGTAPAKRATKSAAAKGPAKKAAAKKAGPATRAKKGDG
DVDGTDDVTPVEELDGAPEDIDEADIELEEIDDDEVVVEGAATTDKATAKVTEAGKAETE
DGDDDISEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNA
EEEVELAKRIEAGLYATQKFAEFAEKGEKLTTQVRRDYQWIQRDGDRAKNHLLEANLRLV
VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA
RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL
DQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTD
GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
gtgaagccggtggccgccaaggcgcccgcgaaggctcctgccaagaaggctgccgcgaag
accgcgaacggcaccgcccccgcgaagcgcgccacgaagtcggccgccgccaagggaccg
gcgaagaaggcggccgccaagaaggccggccccgccacccgcgcgaagaagggtgacggc
gacgtcgacggcaccgacgacgtgacgcccgtcgaggaactcgacggcgcccccgaggac
atcgacgaggccgacatcgaactcgaggagatcgacgacgacgaggtcgtggtcgagggt
gcggccaccaccgacaaggccaccgccaaggtgaccgaggccggcaaggccgagaccgag
gatggcgacgacgacatctccgagccctccgagaaggacaaggcctctggcgacttcgtc
tgggacgaggaggagtccgaggcactgcggcaggcccgcaaggacgccgaactcacggcc
tccgccgactcggtccgcgcctacctcaagcagatcggcaaggtggcgctgcttaacgcc
gaggaggaggtcgaactagccaagcgcatcgaggccggcctctacgcgacgcagaagttc
gccgagttcgccgagaagggcgagaagctcaccacccaggtccgacgtgactaccagtgg
atccagcgtgacggcgatcgggcgaagaaccacctgctcgaggccaacctgcgcctcgtg
gtctcgctggccaagcgctacacgggccgcggcatggcgttcctggacctgatccaggag
ggcaacctgggtctgatccgcgcggtcgagaagttcgactacaccaagggctacaagttc
tcgacgtacgccacctggtggatccgtcaggccatcacccgcgccatggcagaccaggcc
cgcaccatccgcatccccgtgcacatggtcgaggtcatcaacaagctcggccgcatccag
cgcgaactcctgcaggacctgggccgcgagcccacgcccgaggaactcgccaaggagatg
gacatcacgccggagaaggtgctggagatccagcagtacgcccgtgagccaatctcgctg
gaccagaccatcggcgacgagggcgacagccagctcggcgacttcatcgaggactccgag
gccgtcgtggccgtggacgcggtgtcgttcacgctgctgcaggatcagctgcagtcggta
ctcgagaccctgtccgagcgtgaggccggtgtcgtccggctgcgcttcggcctcaccgac
ggtcagccgcgcaccctcgacgagatcggtcaggtgtacggcgtgacgcgcgagcgcatc
cggcagatcgagagcaagaccatgtcgaagctgcgccacccgagccgctcgcaggtcctg
cgcgactacctggactag
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