Mycolicibacterium sediminis: MSEDJ_52140
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Entry
MSEDJ_52140 CDS
T07629
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSEDJ_52140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msei03021
]
MSEDJ_52140
03019 Messenger RNA biogenesis [BR:
msei03019
]
MSEDJ_52140
Transcription machinery [BR:
msei03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MSEDJ_52140
Messenger RNA biogenesis [BR:
msei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSEDJ_52140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
VAD1-2
Motif
Other DBs
NCBI-ProteinID:
BBY31118
UniProt:
A0A7I7QXR0
LinkDB
All DBs
Position
complement(5431994..5434234)
Genome browser
AA seq
746 aa
AA seq
DB search
MTDTDLITADGSSDDVATPDTTSSSSDSAAPETAGAVQTPTAETAPKGNAASGDRGTSLT
AMVLPDLRALATQLGVKGSSGMRKGELIAAIREHRGETNGTATAATTAAAEPAQQAPEQT
GQPAADAAAAPAATRPRRERRGASRQTGAPAAETEAGEARADEQPTPKVETPQVEKADAT
PAPEAQPADKVDDKPADKPDVKGESTDGDDSRRRQQTTKGGQGGQDDQGNTGGGNNRNRN
RNDGGGNNRNDGGNNRNDGGNNRNDGGGNNRNDGGGNNRNDGGGNNRNDGGGNNRNDNRN
DGGGNRTDNRNNNNNDDDDDDGDGRGGRRGRRFRDRRRRERGGSGEGGGGGDTELRDDDV
VQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAITGAVRVPREGENT
GSNSNSNNPRQKFNPLVRIDTINGGPVEDARNRPDFTKLTPLYPNQRLRLETTPDRMSTR
VIDLIMPIGKGQRALIVSPPKAGKTMILQDIANAIATNNPECHLMVVLVDERPEEVTDMQ
RSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA
SGRILSGGVDSTALYPPKRFLGAARNIEFGGSLTIIATALVETGSTGDTVIFEEFKGTGN
AELKLDRKIAERRVFPAVDVNPSNTRKDELLLSTDEFGVVHKLRRVLSGLDSHAAIDLLM
SQLRKTKTNYEFLVQVSKTTPGMDRD
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcacggcggacggcagtagcgacgacgtcgccacgcccgac
accacctcttcgagttccgactccgctgcgccggaaacggcaggcgcagtgcagactccg
accgcagagaccgcacccaagggcaacgccgcatccggcgaccgcggcacgtcgctcacc
gcgatggtgctgccggacctgcgcgcactcgccacccaactgggtgtgaagggctcgtcc
ggaatgcgcaagggcgagctgatcgctgcgatccgcgagcaccgaggcgagaccaacggc
accgccacggcggccaccaccgccgccgcagagcccgctcagcaggctcccgagcagacc
ggccagcccgccgcggacgccgcggcggcacctgctgccacccgtccccgccgggaacgc
cgtggcgcctcccgtcagaccggtgcgccggctgccgagaccgaggccggcgaggcccgg
gccgacgagcagccgaccccgaaggtcgagacacctcaggtcgagaaggccgacgcgacg
cccgcccccgaggcccagccggccgacaaggtcgacgacaagccggccgataagcccgac
gtcaagggcgagtccaccgacggtgacgactcgcgccggcgccagcagaccaccaagggt
ggtcagggcggccaggacgatcagggcaacaccggcggcggcaacaaccgcaaccgcaac
cgcaacgacggtggcgggaacaaccgcaacgacggcggcaacaaccgcaatgacggtggc
aacaaccgcaacgacggtggcggcaacaaccgcaacgatggcggcggcaacaaccgcaac
gatggcggtggcaacaaccgcaacgatggcggcggcaacaaccgcaacgacaaccgcaac
gacggtggcggcaaccgcaccgacaaccgcaacaacaacaacaacgacgatgacgacgac
gatggcgacggccggggcggacgtcgcggacgtcggttccgcgaccgcaggcgccgtgag
cgcggcggcagcggcgaaggcggcggcggtggcgacaccgaactgcgtgacgacgacgtc
gtacagccggtcgccggcatcctcgacgtgctcgacaactacgcattcgtgcgtacgtcg
ggctacctcgcgggaccgaacgacgtctacgtgtcgatgaacatggtccgcaagaacggg
cttcgtcgcggcgacgccatcaccggtgccgtgcgggttccgcgcgagggcgagaacacg
ggcagcaacagcaatagcaacaacccgcgtcagaagttcaacccgctggtccgcatcgac
accatcaacggtggcccggtggaggacgccaggaaccggccggacttcacgaagctgacc
ccgctctacccgaaccagcggctgcgtctcgagaccacgcccgaccggatgagcacgcgc
gtgatcgacctgatcatgccgatcggcaagggccagcgcgccctgatcgtgtcgcctccc
aaggccggcaagacgatgatcctgcaggacatcgccaacgcgatcgcgaccaacaacccc
gagtgccacctcatggtggtgctggtcgacgagcggcccgaagaggtcaccgacatgcag
cgcagcgtcaagggtgaggtcatcgcctccaccttcgaccgcccgccgtcagaccacacg
caggcggcggaactggccatcgagcgcgccaagcgcctggtggagcagggcaaggacgtc
gtcgtgctgctggactcgatcacccgtctcggtcgcgcgtacaacaacgcgtcaccggcg
tcgggtcgcatcctgtccggcggtgtcgactcgaccgcgctctacccgccgaagcgcttc
ctcggcgccgcccgcaacatcgagttcggtggatcgctgaccatcatcgccaccgcgctg
gtggagaccggttccacgggtgacacggtgatcttcgaggagttcaagggcaccggcaac
gccgaactcaagctcgaccgcaagatcgcggagcgccgcgtgttcccggccgtcgacgtc
aacccgtcgaacacccgcaaggacgagctgctgctgtccaccgacgagttcggcgtcgtg
cacaagctgcgccgggtgctctcggggctcgactcgcatgcggccatcgacctgctgatg
agccagctgcgcaagacgaagacgaactacgagttcctggtacaggtctccaagaccacc
ccgggaatggaccgcgactga
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integrated database retrieval system