KEGG   Mycolicibacterium sediminis: MSEDJ_52140
Entry
MSEDJ_52140       CDS       T07629                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
msei  Mycolicibacterium sediminis
Pathway
msei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MSEDJ_52140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msei03021]
    MSEDJ_52140
   03019 Messenger RNA biogenesis [BR:msei03019]
    MSEDJ_52140
Transcription machinery [BR:msei03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     MSEDJ_52140
Messenger RNA biogenesis [BR:msei03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MSEDJ_52140
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N AAA_25 Spore_III_AA NACHT AAA_22 VAD1-2
Other DBs
NCBI-ProteinID: BBY31118
UniProt: A0A7I7QXR0
LinkDB
Position
complement(5431994..5434234)
AA seq 746 aa
MTDTDLITADGSSDDVATPDTTSSSSDSAAPETAGAVQTPTAETAPKGNAASGDRGTSLT
AMVLPDLRALATQLGVKGSSGMRKGELIAAIREHRGETNGTATAATTAAAEPAQQAPEQT
GQPAADAAAAPAATRPRRERRGASRQTGAPAAETEAGEARADEQPTPKVETPQVEKADAT
PAPEAQPADKVDDKPADKPDVKGESTDGDDSRRRQQTTKGGQGGQDDQGNTGGGNNRNRN
RNDGGGNNRNDGGNNRNDGGNNRNDGGGNNRNDGGGNNRNDGGGNNRNDGGGNNRNDNRN
DGGGNRTDNRNNNNNDDDDDDGDGRGGRRGRRFRDRRRRERGGSGEGGGGGDTELRDDDV
VQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAITGAVRVPREGENT
GSNSNSNNPRQKFNPLVRIDTINGGPVEDARNRPDFTKLTPLYPNQRLRLETTPDRMSTR
VIDLIMPIGKGQRALIVSPPKAGKTMILQDIANAIATNNPECHLMVVLVDERPEEVTDMQ
RSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA
SGRILSGGVDSTALYPPKRFLGAARNIEFGGSLTIIATALVETGSTGDTVIFEEFKGTGN
AELKLDRKIAERRVFPAVDVNPSNTRKDELLLSTDEFGVVHKLRRVLSGLDSHAAIDLLM
SQLRKTKTNYEFLVQVSKTTPGMDRD
NT seq 2241 nt   +upstreamnt  +downstreamnt
gtgaccgatacggacctcatcacggcggacggcagtagcgacgacgtcgccacgcccgac
accacctcttcgagttccgactccgctgcgccggaaacggcaggcgcagtgcagactccg
accgcagagaccgcacccaagggcaacgccgcatccggcgaccgcggcacgtcgctcacc
gcgatggtgctgccggacctgcgcgcactcgccacccaactgggtgtgaagggctcgtcc
ggaatgcgcaagggcgagctgatcgctgcgatccgcgagcaccgaggcgagaccaacggc
accgccacggcggccaccaccgccgccgcagagcccgctcagcaggctcccgagcagacc
ggccagcccgccgcggacgccgcggcggcacctgctgccacccgtccccgccgggaacgc
cgtggcgcctcccgtcagaccggtgcgccggctgccgagaccgaggccggcgaggcccgg
gccgacgagcagccgaccccgaaggtcgagacacctcaggtcgagaaggccgacgcgacg
cccgcccccgaggcccagccggccgacaaggtcgacgacaagccggccgataagcccgac
gtcaagggcgagtccaccgacggtgacgactcgcgccggcgccagcagaccaccaagggt
ggtcagggcggccaggacgatcagggcaacaccggcggcggcaacaaccgcaaccgcaac
cgcaacgacggtggcgggaacaaccgcaacgacggcggcaacaaccgcaatgacggtggc
aacaaccgcaacgacggtggcggcaacaaccgcaacgatggcggcggcaacaaccgcaac
gatggcggtggcaacaaccgcaacgatggcggcggcaacaaccgcaacgacaaccgcaac
gacggtggcggcaaccgcaccgacaaccgcaacaacaacaacaacgacgatgacgacgac
gatggcgacggccggggcggacgtcgcggacgtcggttccgcgaccgcaggcgccgtgag
cgcggcggcagcggcgaaggcggcggcggtggcgacaccgaactgcgtgacgacgacgtc
gtacagccggtcgccggcatcctcgacgtgctcgacaactacgcattcgtgcgtacgtcg
ggctacctcgcgggaccgaacgacgtctacgtgtcgatgaacatggtccgcaagaacggg
cttcgtcgcggcgacgccatcaccggtgccgtgcgggttccgcgcgagggcgagaacacg
ggcagcaacagcaatagcaacaacccgcgtcagaagttcaacccgctggtccgcatcgac
accatcaacggtggcccggtggaggacgccaggaaccggccggacttcacgaagctgacc
ccgctctacccgaaccagcggctgcgtctcgagaccacgcccgaccggatgagcacgcgc
gtgatcgacctgatcatgccgatcggcaagggccagcgcgccctgatcgtgtcgcctccc
aaggccggcaagacgatgatcctgcaggacatcgccaacgcgatcgcgaccaacaacccc
gagtgccacctcatggtggtgctggtcgacgagcggcccgaagaggtcaccgacatgcag
cgcagcgtcaagggtgaggtcatcgcctccaccttcgaccgcccgccgtcagaccacacg
caggcggcggaactggccatcgagcgcgccaagcgcctggtggagcagggcaaggacgtc
gtcgtgctgctggactcgatcacccgtctcggtcgcgcgtacaacaacgcgtcaccggcg
tcgggtcgcatcctgtccggcggtgtcgactcgaccgcgctctacccgccgaagcgcttc
ctcggcgccgcccgcaacatcgagttcggtggatcgctgaccatcatcgccaccgcgctg
gtggagaccggttccacgggtgacacggtgatcttcgaggagttcaagggcaccggcaac
gccgaactcaagctcgaccgcaagatcgcggagcgccgcgtgttcccggccgtcgacgtc
aacccgtcgaacacccgcaaggacgagctgctgctgtccaccgacgagttcggcgtcgtg
cacaagctgcgccgggtgctctcggggctcgactcgcatgcggccatcgacctgctgatg
agccagctgcgcaagacgaagacgaactacgagttcctggtacaggtctccaagaccacc
ccgggaatggaccgcgactga

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