Mycolicibacterium sediminis: MSEDJ_53130
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Entry
MSEDJ_53130 CDS
T07629
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSEDJ_53130 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msei03019
]
MSEDJ_53130 (deaD)
03009 Ribosome biogenesis [BR:
msei03009
]
MSEDJ_53130 (deaD)
Enzymes [BR:
msei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSEDJ_53130 (deaD)
Messenger RNA biogenesis [BR:
msei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSEDJ_53130 (deaD)
Ribosome biogenesis [BR:
msei03009
]
Prokaryotic type
rRNA helicases
MSEDJ_53130 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
Flavi_DEAD
HEM4
adh_short
FlgM
Surface-like_ins_dom
Motif
Other DBs
NCBI-ProteinID:
BBY31217
UniProt:
A0A7I7QYZ1
LinkDB
All DBs
Position
complement(5542626..5544311)
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AA seq
561 aa
AA seq
DB search
MTSPESEAHGPETTFADLQIHPKVLQALSDVGYESPSAIQAETIPAMMAGSDVVGLAQTG
TGKTAAFAIPILSKIDTESRTTQALVLAPTRELALQVAEAFSRYGAHLRVNVLPIYGGTS
YGPQLAGLKRGAQVVVGTPGRVIDHLEKGSLDVSHLDYMVLDEADEMLQMGFAEDVEKIL
AETPEYKQVALFSATMPPAIRKITSKYLHDPVEVTVKSKTQTAENITQRYIQVSGHRKMD
AITRLLEVEPFEAMIVFVRTKQATEEVAEKLRARGFNAAAINGDIAQAARERTIAQLKDG
TIDILVATDVAARGLDVERISHVLNYDIPHDPESYVHRIGRTGRAGRAGTALLFVSPRER
HLLNSIERVTRQKLVESQLPSVDDVNAQRVEKFRESITNGLSNPGIDLFRKLIEEYERDN
DVPMADVAAALALQSHDGGEFLMTEPPPEKRRERPERDSRDDGPPRKRRDTRDDLATYRI
AVGKNHRVMPGAIVGAIANEGGLHRSDFGHISIRPDYSLVELPKKLSSETLKKLERTKIQ
GMPIKLVLDRGPKPFRGNKPR
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcccgaatcggaagcccacggccccgagaccacctttgccgacctgcagata
caccccaaggtgctgcaggccctctccgacgtcggctacgagtcgccgtcggccatccaa
gccgagaccatccccgcgatgatggccggctccgacgtggtcggactcgctcagaccggc
accggcaagaccgctgccttcgcgatcccgatcctgtcgaagatcgacaccgagagccgc
accacgcaggcgctcgtcctggcgcccacccgcgagttggccctccaggtcgccgaggcg
ttcagccgctacggcgctcacctgcgcgtcaacgtgctgccgatctacggcggcacgtcc
tacggtccgcagctcgcgggactcaagcggggcgcgcaggtcgtcgtcggtacgcccggc
cgcgtgatcgaccacctcgagaagggcagcctcgacgtctcgcacctcgactacatggtg
ctcgacgaggccgacgagatgctgcagatgggcttcgccgaggacgtcgagaagatcctc
gccgagacccccgagtacaagcaggtcgcgctgttctcggcgaccatgccgccggcgatc
cgcaagatcaccagcaagtacctgcacgacccggtcgaggtcacggtcaagtcgaagacc
cagaccgccgagaacatcacccagcgctacatccaggtgtccggccatcgcaagatggac
gcgatcacgcggctgctcgaggtcgagccgttcgaggcgatgatcgtgttcgtccgcacc
aagcaggccaccgaggaggtcgccgagaagctgcgggcgcgcggcttcaacgccgccgcc
atcaacggtgacatcgcccaggccgcccgcgagcgcacgatcgcgcagctcaaggacggc
acgatcgacatcctcgtcgcgaccgacgtcgccgcccgcggtctggacgtcgagcgcatc
tcgcacgtgctgaactacgacatcccgcacgaccccgagtcgtacgtgcaccgcatcggt
cgcaccggccgcgccgggcgtgcgggcaccgcgctgctgttcgtctcgccccgcgagcgg
cacctgctgaactccatcgagcgggtgacccggcagaagctcgtcgagtcgcagctgccg
tcggtcgacgacgtcaacgcccagcgggtggagaagttccgcgagtcgatcacgaacggc
ctgagcaacccgggcatcgatctgttccgcaagctgatcgaggagtacgagcgcgacaac
gacgtgccgatggccgacgtcgccgccgcgttggcattgcagagccacgacggtggcgag
ttcctgatgacggagcccccacccgagaagcgccgcgagcgtcccgagcgcgactcccgc
gacgacgggccgccgcgcaagcgccgcgacacccgtgacgatctggccacgtaccgcatc
gcggtcggcaagaaccaccgggtcatgcccggcgccatcgtgggtgccatcgccaacgag
ggcgggctgcaccgcagcgacttcgggcacatctccatccggccggactactcgctggtc
gaactgcccaagaagctctccagcgagacgttgaagaagctggagcgcaccaagattcag
ggcatgccgatcaaactggtgctcgatcgcggacccaagccctttagaggcaacaagccg
aggtga
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