Mycolicibacterium sediminis: MSEDJ_57190
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Entry
MSEDJ_57190 CDS
T07629
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
msei
Mycolicibacterium sediminis
Pathway
msei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSEDJ_57190 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msei03400
]
MSEDJ_57190 (mfd)
Enzymes [BR:
msei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSEDJ_57190 (mfd)
DNA repair and recombination proteins [BR:
msei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MSEDJ_57190 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBY31623
UniProt:
A0A7I7QYZ8
LinkDB
All DBs
Position
complement(5957352..5961038)
Genome browser
AA seq
1228 aa
AA seq
DB search
MNAPGYDHVQTPIRGLVELALTDPGLRDVTRRAAEGVAEAALVGPAAARLFVAAALVEVG
PLLVVTATGREADELAGELRAVLGDAVAMFPSWETLPHERLSPGVETVGARMKVLRRLAH
PEDTRLGPPLRAVVTTVRSLLQPMPPDVAGIEPVSLTVGVDADFDGTIARLVELAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRIEFWGDEVSEMRMFSIADQRSIPEIEIDTVVAV
PCREMLLTPDVRDRAAALSAEHPAGGESVTGTVGDMLAKLAEGMPVDGMEALLPVLRPTD
LSLLVDQLPDGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAVGGDAPIDIEQLGGS
GFRELSDVRAGATVGGHPWWTLSQLGDEQAVTLDVRAAPSARGQQVGIDEMFAMLRAHVA
TGGLAAIVAPGAGTAHRIVEQLGEADTPAGMLEPGAAPKPGVVGVLTGPLCEGVVLPGAN
LVVVTETDLTGNRASANEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERTVG
GARREYLVLEYASSKRGGGSDKLFVPMDALDQLSRYVGGEAPTLSKLGGSDWQNTKTKAR
KAVREIAGELVALYAKRQAAPGYAFGPDTPWQNEMEDAFGFTETMDQLTAITEVKNDMEK
AVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSSRMAGFPV
TVKGLSRFTDPAESRAVLEGMKDGSVDIVIGTHRLLQTGVTWKDLGLVVVDEEQRFGVEH
KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERFPVLTYVGPQDDKQV
AAALRRELLRDGQAFYIHNRVRSIDSAAARIRDLVPEARVVVAHGQMPEEQLERTVEGFW
NREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYSP
EVPLTELAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAVDGKTVATVEEPKDVRIDLPIDANLPPEYIGSDRLRLEGYRRLAAASDE
AGIAAVVDELVDRYGPLPEPAQRLVAVARLRLLCREFGVTEVLAVNESTLRVSPLPLQDS
QQLRLKRMYPSAAFRATTSTVTIPIPRAGSGIGAPRIRDLELAGAVAGLLLALNGRPQSD
VDITDFERWRDQQGSGDQRRVTASPARK
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaccggggtacgaccatgtccagaccccgattcgcgggctcgtcgagctggcg
ctcaccgacccgggcctgcgcgacgtcacgcgccgggccgccgagggcgtcgccgaggcc
gcactggtcgggccggccgccgcccggctgttcgtcgcggccgcgctggtggaggtcggg
ccgctgctggtggtcaccgccacgggccgcgaggccgacgagctcgcgggcgaactgcgc
gcggtcctcggcgacgccgtcgcgatgttcccgtcctgggagacgctgccgcacgaacgc
ctgtcgccgggtgtggagaccgtcggcgcgcggatgaaggtgctgcgccggctcgcccat
ccggaggacacccgcctgggaccgccgctgcgggcggtggtgacgaccgtccgctcgctg
ctgcagccgatgccgccggacgtcgcgggcatcgagccggtgtcgctcaccgtgggcgtc
gacgccgacttcgacggcaccatcgcccgtctcgtcgaactcgcctacacgcgcgtcgac
atggtcggcaagcgcggcgagttcgcggtccgcggcggcatcctcgacctcttcccgccg
accgccgagcaccccgtccgcatcgagttctggggcgacgaggtgtccgagatgcggatg
ttctcgatcgccgaccagcggtccatcccggagatcgagatcgacaccgtcgtcgcggtg
ccctgccgcgagatgctcctgaccccggacgtgcgggaccgcgcggcggcgctgtccgcc
gagcacccggcaggcggggagtcggtcaccggcacggtcggcgacatgctcgccaagctc
gccgagggcatgccggtcgacggcatggaagcgctgctgccggtgcttcgtccgacggac
ctgtcgctgctcgtcgaccagttgcccgacggcacgcccgtgctggtgtgcgaccccgag
aaggtgcgcacccgcgccgccgacctcatcaagaccggccgcgagttcctcgaggcgtcg
tggtcggtggcggccgtcggcggtgacgcgcccatcgacatcgagcagctcggcggttcg
ggcttccgcgaattgagcgacgtgcgtgccggcgcgacggtgggcggtcacccgtggtgg
acgctcagtcagctcggcgacgagcaggccgtcaccctggacgtccgggcggctccgtcg
gcgcggggtcagcaggtcgggatcgacgagatgttcgcgatgctgcgcgcgcacgtggcc
acgggcggcctggccgcgatcgtcgcccccggtgcgggtacggcgcaccgcatcgtcgag
cagctgggcgaagccgacactcccgcaggcatgttggagccgggcgccgcacccaagccg
ggcgtcgtcggcgtcctcaccggcccgctctgcgagggcgtggtgctgcccggcgccaac
ctcgtcgtcgtcaccgagaccgacctcaccggcaaccgtgcgtcggccaacgagggcaag
cggcttgccgcgaagcgccgcaacgtcgtcgacccgctggcgctgacggccggcgacctg
gtggtgcacgaccagcacggcatcggccgcttcgtggagatgaccgaacggaccgtcggc
ggggcgcgccgcgaatacctggtactcgagtacgcgtcgagcaagcgtggcggcggatcc
gacaagttgttcgtgccgatggacgccctcgatcagctgtcccgctacgtcggtggtgag
gcgccgacgctcagcaagctcggcggcagcgactggcagaacacgaagaccaaggcgcgc
aaggcggttcgcgagatcgccggtgagctcgtcgccctctacgccaagcgccaagccgca
cccggttacgcgttcggcccggacactccgtggcagaacgagatggaggacgcgttcggg
ttcaccgagaccatggaccagctgaccgcgatcaccgaggttaagaacgacatggagaag
gcggtcccgatggaccgcgtcatctgcggcgacgtgggctacggcaagaccgagatcgcg
gtccgtgcggcgttcaaggccgtgcaggacggcaagcaggtcgccgttctcgtcccgacg
acgctgctcgccgatcagcacctgcagacgttctcgtcccggatggcggggttcccggtg
acggtgaaggggttgtcgcggttcaccgacccggccgagtcgcgcgccgtgctcgagggg
atgaaggacgggtcggtcgacatcgtcatcggcacgcaccgcctgctgcagaccggtgtg
acgtggaaggacctcggcctggtcgtcgtcgacgaggagcagcgcttcggcgtcgagcac
aaggagcacatcaagtcgatgcgcacccacgtcgacgtcctcacgatgagcgcgacgccg
atcccgcgcacactcgagatgagcctggcaggcatccgcgagatgtcgaccatcctgacc
ccgccggaggagcgcttcccggtgctgacctacgtcggcccccaggacgacaagcaggtg
gcggcggccctgcgccgcgagctgctgcgcgacgggcaggcgttctacatccacaaccgg
gtgcggtccatcgactcggcggccgcgaggattcgcgatctggtgcccgaggcgcgcgtc
gtggttgcgcacgggcagatgcccgaggagcaactggagcgcaccgtcgaggggttctgg
aaccgcgagttcgacatcctggtgtgtacgacgatcgtcgagacgggcctggacatctcg
aacgccaacaccctgatcgtggagcgcgccgacacgttcggcctgtcgcagctgcaccag
ctgcggggccgcgtgggccgcagccgtgaacgcggctacgcgtacttcctgtactcgccc
gaggtgccgctcacggagctggcctacgaccgtctggccaccatcgcgcagaacaacgag
ctgggtgcgggcatggccgtggcgatgaaggacctcgagatccgcggtgccggaaacgtt
ttgggcgccgagcagtccgggcacgtcgcgggcgtggggttcgacctgtacgtgcggctg
gtcggcgaggccgtcgaggcctaccgggccgcggtcgacggcaagaccgtcgcgacggtg
gaggagccgaaggacgtccgcatcgacctgccgatcgacgcgaacctgccgccggagtac
atcggcagcgaccggctccggctcgagggctaccggcgtctggcggccgcctccgacgag
gcggggatcgccgccgtcgtcgacgaactcgtcgaccggtacggtccgctgcccgagccc
gcgcagcggctggtggccgtcgcgaggctgcgactgctgtgccgcgagttcggcgtgacc
gaggtgctcgccgtcaacgagtcgacgctgcgcgtctcgccgctgccgctgcaggactcc
cagcaacttcggctgaagcggatgtacccgagtgcggcgttccgcgcgacgacgtccacg
gtaacgatcccgatcccccgggcgggcagcggcatcggtgcgccacgcatccgtgatctt
gaattggccggtgccgtagcgggattgctgctggcgctgaatggcagaccccaatcggat
gttgatataaccgacttcgaacggtggcgcgaccagcagggttcgggtgaccaacgacga
gtgacggcgagccccgcccggaagtag
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